Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2779 147 2e-30 seq1592 140 3e-28 seq12857 127 2e-24 >seq2779 Length=20704 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | ||| |||| || || || ||||||||||| |||||||||||| Sbjct 8149 CCTCCGCGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAA 8208 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||| || || || || | || | |||||||| || || ||| Sbjct 8209 AGAGTTCTGCCATCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGA 8268 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || |||||||| || || |||||| ||| | || | || | |||||| |||| ||||| Sbjct 8269 ATTCCTTCTTTGTCCTGGATTTTTGCTTTTA-CGTTCTCGATGGTGTCTGAAGCTTCGAC 8327 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||||| |||||||| || |||||||| ||||| || ||||| Sbjct 8328 TTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCAT 8375 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | || || ||||| || || |||||||| |||||||| |||||| Sbjct 8602 ATTCCTCCACGAAGACGCAGGACCAGATGAAGTGTGGATTCCTTCTGGATATTGTAATCG 8661 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| |||||||| || | |||| || ||||| || || Sbjct 8662 GAAAGAGTTCTGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAGGCGCTGCTGATCAGGT 8721 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || |||||||| || ||| | |||| ||||| |||| || Sbjct 8722 GGAATGCCTTCCTTGTCTTGAATCTTGGCTTTAACATTCTCTATAGTGTCAGAAGCTTCT 8781 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||||| || || |||||||| || || |||||||| Sbjct 8782 ACCTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATTTGCAT 8831 >seq1592 Length=29089 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| || | ||| |||| |||||| || ||||||||||| ||||| |||||| Sbjct 184 ATACCTCCGCGAAGTCGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCG 243 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||| || || || ||| | ||||||| ||||| ||||| Sbjct 244 GACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGA 303 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||||||||| ||||||||||| ||||| || | || || |||| ||| Sbjct 304 GGGATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCT 363 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| ||||| || || | ||||| || ||||||||||| Sbjct 364 ACTTCCAAAGTAATAGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| || || || ||| | ||||||| ||||| ||||| |||||||||||||| Sbjct 31 TCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGAATGCCTTCTTTG 90 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||||||||| ||||| || | || || || | ||||||||| | || | Sbjct 91 TCTTGAATTTTGGCTTTGACATTCTCAATCGTATCAGATGCCTCGACTTCCAATGTGATG 150 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| ||||| || || ||||| ||||| Sbjct 151 GTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 185 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || | || | || ||||| || || |||||||| || ||||| |||||| Sbjct 640 ATTCCGCCACGTAATCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCG 699 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | ||||| || ||| | ||||| || |||||||| || Sbjct 700 GACAAGGTACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGT 759 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || ||||| || ||||| || || | || | || | ||||| || | || Sbjct 760 GGAATACCCTCTTTGTCCTGAATCTTCGCCTTTA-CGTTCTCGATAGTGTCAGAGGCTTC 818 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| | ||||| || |||| || || |||||||| ||||| Sbjct 819 AACTTCGAGAGTTATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTGCAT 869 >seq12857 Length=4317 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||||| |||| |||||| || |||||||| || ||||| ||||| Sbjct 3815 ATACCACCACGAAGCCTCAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCA 3874 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | ||||||||| || | ||||||| || || ||||| Sbjct 3875 GAAAGCGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGA 3934 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||||||||| || |||||||| ||||| ||| | || ||||| | |||| Sbjct 3935 GGGATGCCTTCTTTGTCCTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCG 3994 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | || || ||||| ||||| || || ||||| ||||| Sbjct 3995 ACTTCCAATGTGATGGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4044 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||| | ||||||||||| || ||||| ||||| | || | ||| || Sbjct 4064 ACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCTTCG 4123 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||||||||| | ||||||| ||||| ||||| || || ||||| ||||| ||| Sbjct 4124 AGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAGGGATACCTTCCTTATCCTGA 4183 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||||| |||| || || || | ||||||||| | || | ||||| Sbjct 4184 ATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCGACTTCCAATGTGATGGTTTTA 4243 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || || ||||| ||||| Sbjct 4244 CCGGTGAGAGTCTTGACGAAAATCTGCAT 4272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189 || ||||| || || ||||| || || ||||||||||| |||| | | || | Sbjct 3608 ACAAGATGTAGTGTAGATTCTTTCTGAATATTATAATC--TGACAAAGTACGTCCGTCCT 3665 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | || || || ||| | |||| || |||||| || || |||||||| ||||| |||| Sbjct 3666 CGAGCTGCTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAGGAATGCCCTCTTTGTCTT 3725 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||| || | || | || || |||| ||| || || | ||| | |||| Sbjct 3726 GAATTTTAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTACCTCCAAAGTGATAGTTT 3785 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | |||||| || ||||||||||| Sbjct 3786 TTCCTGTCAAAGTTTTGACGAAAATTTGCAT 3816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451795255927840