Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq27420 150 5e-32 >seq27420 Length=994 Score = 150 bits (166), Expect = 5e-32 Identities = 227/318 (71%), Gaps = 5/318 (2%) Strand=Plus/Minus Query 8782 GTCGTTGACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATGCGGGCCACC 8841 ||| | |||||| ||||| ||||| | |||| ||| || |||| || || ||| Sbjct 984 GTCATCGACTACTTGCAGTTGATG-CAGGTGCCGG--GCAACAAGGAAAACCGCGCTACC 928 Query 8842 GAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATC 8901 ||| | |||| || ||||| | | || | ||||| |||||| | || ||| | Sbjct 927 GAGATTTCCGAGATTTCGCGTTCGTTGAAGGGCTTGGCGAAAGAACTCAATGTGCCGGTG 868 Query 8902 ATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATG 8961 ||||||||||| ||||| || || ||| || | || | |||||||||| | ||| Sbjct 867 ATCGCGCTGTCCCAGCTCAACCGCTCGCTGGAACAGCGTGCGGACAAGCGGCCGATGATG 808 Query 8962 TCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTAC 9021 ||||||||||| || ||||| || ||||||||||||||||| || ||| | || |||||| Sbjct 807 TCCGATCTGCGTGAATCGGGCGCTATCGAGCAGGATGCCGATGTCATCATGTTCATCTAC 748 Query 9022 CGCGATGAGGTCTATAACCCCGACAGCG-CAGATCGCGGTACGGCCGAAATCATCATTGC 9080 || || ||| ||| ||| || | || | || || ||||||||||||||| | Sbjct 747 CGTGACGAGTACTACAACAAGGA-ATCGCCCGACAAAGGGCTGGCCGAAATCATCATCGG 689 Query 9081 GAAGCAGCGAAACGGGCC 9098 |||||||| ||||| || Sbjct 688 CAAGCAGCGCAACGGCCC 671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127489856514384