Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_013237.1 Length=8242 Score E Sequences producing significant alignments: (Bits) Value seq8046 147 1e-31 >seq8046 Length=7925 Score = 147 bits (162), Expect = 1e-31 Identities = 354/532 (67%), Gaps = 8/532 (2%) Strand=Plus/Plus Query 1786 ACAATGTGCAGATATTATAAAAGAGCTGAGATGCAAAAAATGACAATGTCACACTGGATT 1845 |||||||||||| | || || | || |||| | || |||||| ||| || ||||| Sbjct 3958 ACAATGTGCAGACACTACAAGCGTGCAGAGAGGGAACAAATGAGTATGAGCCAGTGGATC 4017 Query 1846 TA--TCAGAGATGTCAGGCTGCTAAAGGAGAAGGTAGCTGGAAAGAAATAGTTAAATTTT 1903 | | |||| || | | | |||| ||| ||||| ||||| || |||| Sbjct 4018 AAATTTAGAGGGAGCAAGATATCAGAGGA--AGGAGATTGGAAGCCTATAGTAAAGTTTT 4075 Query 1904 TAAGACACCAGACAATAGAATTTATTTCTTTTCTTGCTGATTTTAAAAAATTTTTGCGTG 1963 |||| || ||| |||| || | || || ||||||| ||||| |||||| | Sbjct 4076 TAAGGCATCAGGGGGTAGAGTTCGTGTCATTCCTTGCTGCCTTTAAGTCATTTTTAAAAG 4135 Query 1964 GCACCCCTaaaaaaaaCTGCTTAGTTTTTTGGGGTCCTCCTAATACAGGAAAGTCTTTGT 2023 | || || || || ||| |||| |||| || ||| | ||||||| || || | | Sbjct 4136 GTGTGCCCAAGAAGAATTGCATAGTGTTTTATGGACCTGCAGATACAGGCAAATCATATT 4195 Query 2024 TTTGCATGAGCCTACTGAATTTTTTGAAAGGCAGGGTAATATCATTTGTGAATAGCAGGA 2083 | |||||||| || || | || | ||| |||||||||| || ||| ||| | Sbjct 4196 TCTGCATGAGTCTTTTGCAGTTCCTAGGTGGCGCTGTAATATCATATGCCAATTCCAGTA 4255 Query 2084 GTCAATTTTGGTTGCAGCCTTTGTCGGACACCAAGATTGGTCTTTTAGATGATGCTACAA 2143 | || |||||| ||||||| || | |||| ||||| || || | || ||||| || Sbjct 4256 GCCACTTTTGGCTGCAGCCCTTAGCTGACAGTAAGATAGGACTACTGGACGATGCGAC-- 4313 Query 2144 GGCCT--TGCTGGGATTACTTTGATACATATTTAAGAAATGCATTAGATGGCAATCCTAT 2201 |||| |||||| || ||||||||||| | || || | ||||||| || || | Sbjct 4314 GGCCCAGTGCTGGACGTATATTGATACATATCTTAGGAACCTACTAGATGGAAACCCCTT 4373 Query 2202 CAGTATTGACTGCAAACATAAAGCTCCCTTTCAGATAAAATGTCCACCCCTGATGGTCAC 2261 |||||| ||| | |||||||| | | | |||||||||||||| || | ||| | || Sbjct 4374 CAGTATAGACAGGAAACATAAGACCCTGCTGCAGATAAAATGTCCTCCATTAATGATAAC 4433 Query 2262 AACAAATGTGAATGTTTGGGGTGATGAGCGCTGGAAATATCTTCGCAGTAGA 2313 ||| || | ||| | | || || | ||||| ||| | ||||| ||| Sbjct 4434 AACCAACATAAATCCTCTAGAGGAGGACAGATGGAAGTATTTGCGCAGCAGA 4485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26248327509536