Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2779 140 8e-28 seq121 122 2e-22 seq1592 109 1e-18 >seq2779 Length=20704 Score = 140 bits (154), Expect = 8e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || | ||| || || || |||||||| | || || || | | ||| Sbjct 8155 CGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAAAGAGTT 8214 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || ||||||||||||||||| ||||| || |||||||| ||||| || ||| ||||||| Sbjct 8215 CTGCCATCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCT 8274 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || |||||| || ||| |||| |||||||| | ||| || || | Sbjct 8275 TCTTTGTCCTGGAT-TTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGACTTCAAG 8333 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || |||||||||||||| || || Sbjct 8334 AGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAGATCTG 8372 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||| || || || || || ||||| |||| ||||| || | | ||| Sbjct 8611 CGAAGACGCAGGACCAGATGAAGTGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTT 8670 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||||||||| |||||||| ||||| || |||||||| || || ||| ||| Sbjct 8671 CTGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAGGCGCTGCTGATCAGGTGGAATGCCT 8730 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| || || || | ||||| | | |||||| || | Sbjct 8731 TCCTTGTCTTGAATCTTGGCTTTAACATTCTCTATAGTGTCAGAAGCTTCTACCTCAAGG 8790 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||||||||| || ||||| Sbjct 8791 GTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATTTG 8828 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||| || || || || || ||||| |||| ||||| || | | ||| Sbjct 8383 CGAAGACGCAGGACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTT 8442 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||| || || || || ||||| || ||||||||||| ||||| |||||| Sbjct 8443 CTGCCATCTTCAAGTTGTTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGAATTCCC 8502 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| || || |||||| ||| | ||| |||| | ||| || || | Sbjct 8503 TCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATGGTATCTGAAGCTTCAACTTCAAGG 8562 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || ||||| || || Sbjct 8563 GTGATGGTTTTGCCTGTGAGAGTCTTTACAAAGATCTG 8600 >seq121 Length=74473 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 199442 TTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATG 199501 ||||||| ||| || |||| | ||| | ||||||||||||||| ||||| || ||||| Sbjct 8123 TTTTGGATGTTATAATCAGAGAGAGTACGTCCATCTTCCAGCTGTTTTCCAGCAAAGATA 8182 Query 199502 AGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCG 199561 || |||||||| || || |||||| ||| ||||||||||| ||||| |||| Sbjct 8183 AGTCGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGAATCTTGGCTTTCACATTTTCG 8242 Query 199562 ACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAA 199621 | ||| || | | |||||| || | || || || ||||| ||||| ||||| || ||| Sbjct 8243 ATGGTATCAGAGGCTTCTACCTCGAGAGTAATGGTTTTACCAGTGAGGGTTTTGACGAAA 8302 Query 199622 ATTTG 199626 || || Sbjct 8303 ATCTG 8307 >seq1592 Length=29089 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || | || ||||| || |||||||| | ||||| || | ||| || Sbjct 193 CGAAGTCGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGACAAGGTG 252 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || ||||||||||| || ||||| || | | |||||| |||||| || ||| Sbjct 253 CGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGGATGCCT 312 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || ||||| ||| || || || |||| || |||| | ||||| ||||| Sbjct 313 TCTTTGTCTTGAAT-TTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTACTTCCAA 371 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| | ||||| || |||||||| Sbjct 372 AGTAATAGTTTTTCCCGTCAAGGTTTTGACGAAAATTTG 410 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || || |||||||| || ||||| || | ||||| || | ||| || | ||| Sbjct 654 TCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGACAAGGTACGTCC 713 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| ||||| || |||||||| || | ||||||||||| || ||| || ||| Sbjct 714 GTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTGGAATACCCTCTTT 773 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||||||||| ||| ||| |||| ||||| | | ||| || || | || || Sbjct 774 GTCCTGAATCTTCGCCTTTACGTTCTCGATAGTGTCAGAGGCTTCAACTTCGAGAGTTAT 833 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || | || ||||||||||| || Sbjct 834 AGTTTTTCCAGTTAATGTCTTCACAAAAATCTG 866 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 ||||| || | ||| || | ||| || ||||||||||| || ||||| || | | |||| Sbjct 7 TTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGC 66 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTC 199569 || |||||| ||| |||||| || ||||| ||| || || || || | || || Sbjct 67 TGATCCGGAGGAATGCCTTCTTTGTCTTGAAT-TTTGGCTTTGACATTCTCAATCGTATC 125 Query 199570 TGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || || ||||| ||||| || ||||| |||||||| || || ||||| || Sbjct 126 AGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTG 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178365678045868