Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1592 118 7e-22 seq2779 100 2e-16 seq12857 86.0 4e-12 >seq1592 Length=29089 Score = 118 bits (130), Expect = 7e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||| || ||||||| |||| ||| ||||| ||||| ||||||| ||| |||| | Sbjct 199 CGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGACAAGGTGCGTCCG 258 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||| || || || | ||||| || | ||||||||||| || | |||||||||| Sbjct 259 TCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTG 318 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||| | || | | || |||| || || ||||||||||| Sbjct 319 TCTTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTACTTCCAAAGTAATA 378 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| || ||||| ||||| || ||||| Sbjct 379 GTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| |||||||| ||||| || || || || |||| Sbjct 415 CCACCACGTAGACGAAGAACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGG-- 472 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| || || | || || | ||||| || |||| || || | |||||||| | || Sbjct 473 AAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGG 532 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||||||||| || ||||| ||| | || | | ||||||| ||| | Sbjct 533 GGATGCCTTCTTTATCCTGAATTTTCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCAA 592 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || || || || ||||| || ||||| || ||||||||||| Sbjct 593 CCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACAAAGATCTGCAT 641 Score = 82.4 bits (90), Expect = 5e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 39535 TGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAA 39594 || ||||| ||||||| ||| |||| | || |||| || || || | ||||| || Sbjct 1 TGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAAT 60 Query 39595 CGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACT 39654 | ||||||||||| || | |||||||||||| ||||| ||| | || | | Sbjct 61 CTCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCAATC 120 Query 39655 GTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATC 39714 || || | || || ||||| || || |||||||| || | ||| || ||||| ||| Sbjct 121 GTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATC 180 Query 39715 TGCAT 39719 ||||| Sbjct 181 TGCAT 185 >seq2779 Length=20704 Score = 100 bits (110), Expect = 2e-16 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTT----CATCGTCCAATTGTTTCCCGC 39583 ||| ||||| ||||||||||||| || | ||| |||| |||| || || ||| Sbjct 8184 TTCCTTTTGAATATTATAATCGG----AAAGAGTTCTGCCATCTTCCAGCTGCTTACCGG 8239 Query 39584 CAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA 39643 ||||||| | ||| |||||||| | || | ||||||||||| |||||| ||| | Sbjct 8240 CAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTTGTCCTGGATTTTTGCTTTTA 8299 Query 39644 TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTT 39703 || | | ||||||| ||| || || | |||||| ||||| || || | ||||| Sbjct 8300 CGTTCTCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAATGGTTTTGCCTGTAAGAGTTT 8359 Query 39704 TTACGAAGATCTGCAT 39719 | || ||||||||||| Sbjct 8360 TCACAAAGATCTGCAT 8375 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||| |||| ||| | ||| ||| || || ||||| ||||||| Sbjct 8605 CCTCCACGAAGACGCAGGACCAGATGAAGTGTGGATTCCTTCTGGATATTGTAATCGG-- 8662 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | |||| ||| |||| ||||| ||| |||| || | ||||||||||| | Sbjct 8663 --AAAGAGTTCTGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAGGCGCTGCTGATCAGG 8720 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | |||||| ||||| || || ||||| || ||| ||||| | ||| Sbjct 8721 TGGAATGCCTTCCTTGTCTTGAATCTTGGCTTTAACATTCTCTATAGTGTCAGAAGCTTC 8780 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | || || ||||| || || | |||||| |||||||| |||||| Sbjct 8781 TACCTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATTTGCATG 8832 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||| |||| ||| | ||| ||| || || ||||| ||||||| Sbjct 8377 CCTCCACGAAGACGCAGGACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATCGG-- 8434 Query 39553 AAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | |||| ||| || | |||||| || | ||||| | |||||||||||||| Sbjct 8435 --AAAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCGAAAATCAGACGCTGCTGATCCGG 8492 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 ||| | || |||||||| ||||| || | | ||| || |||| ||| Sbjct 8493 GGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATGGTATCTGAAGCTTC 8552 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || ||||| || || | ||| ||||| ||||||||||| Sbjct 8553 AACTTCAAGGGTGATGGTTTTGCCTGTGAGAGTCTTTACAAAGATCTGCAT 8603 >seq12857 Length=4317 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCA 39564 ||| || ||||||| ||| ||| || || ||||| ||||| | ||| || || || Sbjct 3832 CAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCAG--AAAGCGTGCGACCA 3889 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | |||||| || ||||||| || | ||| ||||||| || | |||||||||| Sbjct 3890 TCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATGCCTTCTTTG 3949 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||| | | | | ||| || | || || ||||| || || Sbjct 3950 TCCTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCGACTTCCAATGTGATG 4009 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || | ||| || ||||| |||||||| Sbjct 4010 GTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || ||||| ||||| ||| || || ||||| ||||| | Sbjct 4046 CCACCACGTAGACGAAGAACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATCAG-- 4103 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| || || |||| || | |||||| || |||| || || | ||||||||||| | Sbjct 4104 AAAGCGTGCGACCATCTTCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAG 4163 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||||| || || ||||| ||| | || ||| || || | || | Sbjct 4164 GGATACCTTCCTTATCCTGAATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCGA 4223 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || || |||||||| || | ||| || ||||| |||||||| Sbjct 4224 CTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347213787800132