Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2779 140 3e-28 seq121 100 3e-16 seq1592 98.7 1e-15 seq532 96.9 3e-15 seq12857 86.0 6e-12 >seq2779 Length=20704 Score = 140 bits (154), Expect = 3e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || ||||| || ||||| ||||||||||||||| | || || || || | Sbjct 8604 AATGCAGATCTTTGTAAAGACTCTCACAGGCAAAACCATCACCCTTGAAGTTGAAGCTTC 8545 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||| | || | ||||||| |||||||||||||||||| | || || Sbjct 8544 AGATACCATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCA 8485 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| |||||||| || || || | | || || ||| ||||| Sbjct 8484 GCAGCGTCTGATTTTCGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGATTACAA 8425 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | ||||| ||| |||| |||||| Sbjct 8424 TATCCAGAAGGAATCCACGCTTCATCTGGTCCTGCGT 8388 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| || || ||||||||||| || | || ||||| || | Sbjct 8376 AATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 8317 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| |||||||| |||||||| |||||||| |||| | Sbjct 8316 AGACACCATCGAGAACG-TAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCCGATC 8258 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || ||||||| || || || |||||||| || | | || || ||| || | Sbjct 8257 AGCAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTATA 8198 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | || ||||||||| | || || || || || |||| Sbjct 8197 ATATTCAAAAGGAATCTACACTTCACTTAGTTTTGCG 8161 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| || |||||||||||| | || || || || | Sbjct 8831 ATGCAAATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTTGAGGTAGAAGCTTCT 8772 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||||| || || | ||||| || || ||||| | || || Sbjct 8771 GACACTATAGAGAATGTTAAAGCCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCAG 8712 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || ||||||||||| || | | || || ||| ||||| Sbjct 8711 CAGCGCCTGATCTTTGCCGGAAAACAGCTGGAAGATGGCAGAACTCTTTCCGATTACAAT 8652 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || ||| |||| |||||| Sbjct 8651 ATCCAGAAGGAATCCACACTTCATCTGGTCCTGCGT 8616 >seq121 Length=74473 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| || |||||||| || |||| || || ||| | Sbjct 8310 ATGCAGATTTTCGTCAAAACCCTCACTGGTAAAACCATTACTCTCGAGGTAGAAGCCTCT 8251 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| || || | || |||||||||||||| | || || Sbjct 8250 GATACCATCGAAAATGTGAAAGCCAAGATTCAGGATAAAGAGGGAATTCCACCAGATCAG 8191 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || ||||||||||| || | || || ||| || || ||| Sbjct 8190 CAGCGACTTATCTTTGCTGGAAAACAGCTGGAAGATGGACGTACTCTCTCTGATTATAAC 8131 Query 38424 ATCCAAAA 38431 |||||||| Sbjct 8130 ATCCAAAA 8123 >seq1592 Length=29089 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || ||||||||||| | || |||||||| | Sbjct 185 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAAGTCGAGGCATCT 126 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || || | | |||| ||||| | |||||||| || ||||| | || || Sbjct 125 GATACGATTGAGAATG-TCAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCGGATCA 67 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | |||| ||||||||| |||||||| |||| |||||| | ||| ||||| Sbjct 66 GCAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAA 7 Query 38423 CATCCA 38428 || || Sbjct 6 TATTCA 1 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || ||||| || || |||| || || ||| | Sbjct 869 ATGCAGATTTTTGTGAAGACATTAACTGGAAAAACTATAACTCTCGAAGTTGAAGCCTCT 810 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||||||||| ||||| | ||||| Sbjct 809 GACACTATCGAGAACG-TAAAGGCGAAGATTCAGGACAAAGAGGGTATTCCACCTGACCA 751 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| ||| || |||||||| || |||| || ||| | ||| ||||| Sbjct 750 GCAGCGCTTGATTTTCGCCGGGAAACAGCTTGAAGACGGACGTACCTTGTCCGATTACAA 691 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || || |||||| | || || ||| |||| || Sbjct 690 TATTCAGAAGGAATCCACTCTCCATCTGGTTCT 658 >seq532 Length=46805 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| | || ||||||||||||||||| || | || ||||||| || ||||| || Sbjct 28458 TCGTCTCGTGAGATGAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTC 28399 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| || || | ||||||||||| ||||||| || ||||| |||||||| || Sbjct 28398 AGCCAGAAGATTGAAGCGAAACTGCCACTGAAGAAGATACCTTCGACCGCCGCGAACGCA 28339 Query 133039 ACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTG-GCGATCCAGCGCAGCGCCCATTCGGC 133097 || | ||||| || || || || | || ||||||| | ||||| | ||| Sbjct 28338 ACTACACGCTCAGGAAATGTAGC-GCTGTCGTGATTGATCCAGTTTAATGCCCAATTGGC 28280 Query 133098 CTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 ||| | | ||||| || | ||| || || || || ||||| Sbjct 28279 CTTCTTTCCCACGCAAGGAAGCGTCTCAATTGCATTAAACAA 28238 >seq12857 Length=4317 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || ||||| ||||| | || || ||||| | Sbjct 3816 ATGCAAATTTTCGTCAAAACTTTGACAGGAAAAACTATCACTTTGGAGGTAGAGGCTTCG 3757 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | ||||| | ||||||||||| ||||| | || || Sbjct 3756 GATACGATCGAGAATGTAAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCAG 3697 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | || |||| ||||||||| ||||| || |||| || || | || || || Sbjct 3696 CAAAGACTGATTTTCGCGGGCAAGCAGCTCGAGGACGGACGTACTTTGTCAGATTATAAT 3637 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | || || ||| | || || ||| | |||||||| Sbjct 3636 ATTCAGAAAGAATCTACACTACATCTTGTACTCCGTCTTAGAGGCGG 3590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499942695503360