Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_014143.1 Length=7737 Score E Sequences producing significant alignments: (Bits) Value seq8046 116 2e-22 >seq8046 Length=7925 Score = 116 bits (128), Expect = 2e-22 Identities = 259/389 (67%), Gaps = 0/389 (0%) Strand=Plus/Plus Query 1940 CCTTAAAATTACTATTTAAAGGCACCCCAAAAAAGAACTGTCTGGTTGTATATGGTCCCC 1999 |||| || | | | || ||||| || || ||||| || | || | ||||| || Sbjct 4115 CCTTTAAGTCATTTTTAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTTTATGGACCTG 4174 Query 2000 CAGATACAGGGAAAACACAGTTTTGTATGAGTCTTATGAAATTTATGCGAGGCAGGGTAC 2059 |||||||||| ||| || | || || ||||||||| || | || | | ||| ||| Sbjct 4175 CAGATACAGGCAAATCATATTTCTGCATGAGTCTTTTGCAGTTCCTAGGTGGCGCTGTAA 4234 Query 2060 TGTCATTCTGTAACAGCAAAAGCCATTTTTGGTTACAGCCATTAACTGAATGTAAAATTG 2119 | |||| || || ||||| |||||| | ||||| ||| |||| |||| || | Sbjct 4235 TATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCTGACAGTAAGATAG 4294 Query 2120 CTTTAATTGATGATGCCACATATCCATGCTGGCAGTATATAGACACATATTTAAGGAATG 2179 || | || ||||| || | |||||| |||||| || |||||| | ||||| Sbjct 4295 GACTACTGGACGATGCGACGGCCCAGTGCTGGACGTATATTGATACATATCTTAGGAACC 4354 Query 2180 GGCTAGATGGAAATCCGGTGACACTAGACTGTAAACACAAAGCTCCGGTGCAAACAAAAT 2239 ||||||||||| || | | ||||| | ||||| || | | | |||| | ||||| Sbjct 4355 TACTAGATGGAAACCCCTTCAGTATAGACAGGAAACATAAGACCCTGCTGCAGATAAAAT 4414 Query 2240 TcccccccTTATTGATAACTACCAACTTGGATATTGCAGGAGATGCAAAATGGAAGTATC 2299 || || ||| ||||||| |||||| | || | || || | | |||||||||| Sbjct 4415 GTCCTCCATTAATGATAACAACCAACATAAATCCTCTAGAGGAGGACAGATGGAAGTATT 4474 Query 2300 TCCATAGTAGAATTAAACAATTTAATTTT 2328 | | || ||| | | || ||||| ||| Sbjct 4475 TGCGCAGCAGAGTAACACTGTTTAAGTTT 4503 Score = 84.2 bits (92), Expect = 1e-12 Identities = 386/608 (63%), Gaps = 17/608 (3%) Strand=Plus/Plus Query 5678 AAGGTTGTTGTTCCCAAGGTATCAGGAAGCCAGTATAGGGTATTCAGGGTAAAGTTGCCG 5737 ||||| ||| ||||||||||| || |||||| | || ||| |||||| ||||| Sbjct 13 AAGGTGTCTGTACCCAAGGTATCGGGCTACCAGTACCGTGTGTTCCATGTAAAGCTGCCG 72 Query 5738 GACCCCAATTATTTCGCTATTACTAGTCCCA---TCTATAACCCCGAGAAGGAAAGGTTG 5794 ||||||||| | || | | | || | ||| ||||| | ||||| | | | || Sbjct 73 GACCCCAATAAGTTTGGTCTGCCTGATGCCAACCTCTATGATCCCGACACCCAGCGTCTG 132 Query 5795 GTGTGGGGGGTGGTGGGCATGCAGGTTGGGAGGGGACAGCCTATTACAGTTGGGAGCTCT 5854 |||||| || || | |||| || | || |||||| | || |||| || Sbjct 133 CTGTGGGCCTGTGTCGGAGTTGAGGTGGGTCGTGGCCAGCCTCTGGGTGTGGGGATATCC 192 Query 5855 GGCAACCCCTATTACAACAAGGTTAAAGATACTGAGAATCCTAACAATTATCAATTAGGA 5914 || |||| || || |||| | | |||||||| ||| | ||||| | || Sbjct 193 GGTCACCCTTACTATAACAGACTGGATGATACTGAAAATGCACACAATCCCGACACAG-- 250 Query 5915 TCGAAGGATGACAGGCAGAATGTGTCCCACGATCCCAAACAGGTACAGCTTTGTGTGATA 5974 | | |||| ||| ||||| | ||| ||| |||||| |||||| | | | | Sbjct 251 -CTGATGATGGGAGGGAGAATATATCCATGGATTATAAACAGACACAGCTGTTTATTTTG 309 Query 5975 GGGTGCACCCCTTGCATTGGAGAACACTGGGAC-AGGGCAAT---TGCATGTGCGGACCA 6030 || |||| ||| || || ||||| ||| | |||||| | |||| |||| || Sbjct 310 GGATGCAAGCCTCCTATAGGTGAACATTGGTCCAAGGGCACTACCTGCA---GCGGGTCA 366 Query 6031 AGTGGTTAATGAGGGTGATTGTCCCCCAATTGAGCTTGTAAATTCAACTATTGAGGATGG 6090 || || ||||| ||||| || || || || ||| | |||||||||||||| Sbjct 367 TCTG----CTGTTGGTGACTGTCCTCCCCTTCAGTTTACAAACACCACTATTGAGGATGG 422 Query 6091 GAATATGTGTGACATAGGATATGGGGCTATGAATTTCAAAGGGCTGCAAGAGAATAGGTC 6150 | ||||| ||| | || | ||||| || |||| | || || || | || Sbjct 423 GGATATGGTTGAAACCGGGTTCGGGGCCCTGGATTTTGCCGCTCTACAGTCCAACAAATC 482 Query 6151 TGAGGTGCCTTTGGATATAAGTCAGGATACCTGCAAGTATCCAGATTTTCTTAAAATGTC 6210 ||| || || ||||||| || | | || || ||||| || | ||| |||||| | Sbjct 483 TGATGTCCCCCTGGATATTTGTACTAACATATGTAAATATCCGGACTATCTGAAAATGGC 542 Query 6211 CAATGAAAAGTATGGCAACTCTTTATTCTTTTTCACTAGAAGGGAGCAGCTATATAGTAG 6270 ||| |||||| | ||| | ||||||| | | ||||||||| | | | | Sbjct 543 TGCTGACCCCTATGGCGATTCTATGTTCTTTTCCCTGCGCAGGGAGCAGATGTTCACCCG 602 Query 6271 GCATTTTT 6278 |||||||| Sbjct 603 GCATTTTT 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24632996606256