Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq237 205 7e-47 seq1817 123 2e-22 seq233 109 4e-18 seq2796 98.7 8e-15 >seq237 Length=61101 Score = 205 bits (226), Expect = 7e-47 Identities = 788/1217 (65%), Gaps = 22/1217 (2%) Strand=Plus/Minus Query 517267 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 517326 ||||| ||||||| || || | |||||| || ||||||||||| || || || || | Sbjct 37610 ATTAAACTTACCATTCGCGTCGATATCAAAAGTAACTTCAATTTGCGGTACACCCCTAGG 37551 Query 517327 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 517386 || ||||| || | || | ||| | || || | || ||||| || || | Sbjct 37550 TGCCGGTGGTATTGCAGTTAACTCGAATTTGCCGAGGATGTTGTTATCCTTCGTCATCGC 37491 Query 517387 TCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAA 517446 || || || ||| | | ||||||| ||| | | ||||||||| ||||| || || || Sbjct 37490 TCTCTCTCCTTCGTAGACTTGGATAAGTACTCCCGGTTGATTATCGGAATACGTGGTGAA 37431 Query 517447 TACTCTGGATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATAC 517505 ||||| | | | | || || || ||||| || | || | | |||||| | || Sbjct 37430 CG-TCTGGGTCTGCTTCGTTGGTATCGTCGTGTTCCTCTTGATCAAAGAGGTCATGACAC 37372 Query 517506 CACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA 517565 | || || ||||| | ||| | || | ||||| || || | || | | || ||||| Sbjct 37371 CGCCAGCGGTTTCAATACCCAATGACAACGGAGTCACGTCCAGCAGAAGTAGATCTTGAA 37312 Query 517566 GTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAG 517625 || || | | ||| | |||||| || |||| || || || || ||||| | Sbjct 37311 CTTCCTCGGACTTGTCACCGTGCAAAATAGCCGCCTGAACTGCTGCGCCGTAAGCAACGG 37252 Query 517626 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGT 517684 | ||||| ||||||| | || ||| || | || || ||||| |||| ||||| || | Sbjct 37251 CCTCATCCGGATTAATGGATTTATTCAGCTCCTTGCCGTTGAAGAAATCTTGAAGTAACT 37192 Query 517685 TGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 517744 | | | ||| || || | | || || || |||| || || || || || | Sbjct 37191 TCTGA-ATCTTTGGTATCCTGGTGGAGCCACCGACTAGAACTATACTGTGAACTTGAGCC 37133 Query 517745 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAG 517804 || |||| || | || | |||| || ||||||||||| |||||||| Sbjct 37132 TTGTCCATCTTCGCGTCTCTAAGTGCTTTCTCGACGGGTTCAAGGGTACTTCTAAACATA 37073 Query 517805 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTT 517862 || | || ||||| |||||| | || || || || ||| | || || ||||| || | Sbjct 37072 TCGGCGCAGAGTTCCTCGAATCTGGCCCTGGT--GATCGACGTGTAGAAATCAATACCCT 37015 Query 517863 CGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC 517922 ||||||| ||||||| ||||| | | ||| || || || | | | || || | Sbjct 37014 CGAACAACGAATCAATCTCAATGCTCGCTTGCGTAGACGAGCTCAACGTTCTCTTCGCTC 36955 Query 517923 GTTCACATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATTGATTCAAATCTGTTTT 517980 ||| || |||||||| || | || | | || ||| | | || | |||||| | || Sbjct 36954 TTTCGCAGGCTGTCCTCAGACGTCTCAGAGATCTCTTGTT-AGTGCT-CAAATCCTTCTT 36897 Query 517981 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 518040 ||||| |||||||| |||| || | | || | ||||| || || || || || Sbjct 36896 GTATTTCCTCTTGAATTCTTGCACGAAGTGATTCACCATTCGATTGTCGAAGTCCTCGCC 36837 Query 518041 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 518100 || | | || | || | |||| | | || | ||| | || || || | | || Sbjct 36836 ACCGAGATGCGTGTCGCCGGCTGTAGATTTCACCTCGAAGATGCCGTCCTCGATTGTCAG 36777 Query 518101 AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 518160 || | ||| || ||| ||||| |||| ||| || || || || ||| |||| | | Sbjct 36776 AATTGATACGTCGAAGGTACCACCGCCCAAATCGAAGATCAGGACGTTCTTTTC---GCC 36720 Query 518161 T-TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCT 518217 | ||| || ||||| || || ||||| | || || || || || || || || || || Sbjct 36719 TGTGGCCTTCTTATCGAGCCCGTACGCTATCGCGGCTGCCGTCGGCTCGTTTATTATCCT 36660 Query 518218 CAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTT 518277 | || ||| |||||||| || || ||||| || || || || || || || ||||| Sbjct 36659 GAGAATATTCAGACCAGCGATAACGCCGGCATCCTTCGTCGCCTGCCTCTGAGAGTCGTT 36600 Query 518278 AAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTACCAATATAAGCGCTTG 518336 ||||| || || |||||||||||||| || || || |||| |||| ||| || | Sbjct 36599 GAAATAAGCTGGCACAGTAATAACGGCGTCCGTCACGGTCTTGCCCAA-ATACGCCTCCG 36541 Query 518337 CCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTG-CTTG 518395 | || | ||||| || ||| | ||| || || | | || |||||| | | ||| Sbjct 36540 CTGTCTCCTTCATCTTCGTTAGGACCATGGAGGACACCTCCTC-GGGGAAGAAGGTCTTC 36482 Query 518396 GATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 518455 || || ||| ||||| | | | |||||| | || |||| | || | || Sbjct 36481 ATCTCGCCTTTATAAGATACCTTGATCTTTGGTTTGCTTCCCTCATTGACTACCGTGAAC 36422 Query 518456 GGCCAGTATTTCATATC 518472 |||||||| ||||| || Sbjct 36421 GGCCAGTACTTCATGTC 36405 >seq1817 Length=26970 Score = 123 bits (136), Expect = 2e-22 Identities = 159/216 (74%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| ||||||||||| | ||||| | | | || |||||| || || Sbjct 5799 ACATCAAAAGTTCCACCACCTAAGTCAAATACTAAAATTTTGTGTTCTTTATCAG---TT 5743 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA-TT 518226 ||||| | |||||| |||| |||||||| |||||||||||||||||||| ||| || Sbjct 5742 TTATCTAAACCATAAGCAATTGCAGCAGCTGTTGGTTCATTAATAATTCTTTCAACTGTT 5683 Query 518227 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 ||| ||||| || || ||||||||||| |||| ||||||| ||| ||||| || || Sbjct 5682 AAG-CCAGCTATAACACCAGCATCTTTAGTTGCTTTTCTTTGTTGATCATTAAAGTAAGC 5624 Query 518287 AGGAACAGTAATAACGGCATCAGTTACTTCTTTACC 518322 |||||| || ||||| || | ||||| | |||| Sbjct 5623 AGGAACTGTGATAACAGCCTTTTTTACTGGTCTACC 5588 >seq233 Length=61284 Score = 109 bits (120), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 870791 AAGAAAA---TTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGA 870847 ||||||| | ||||| |||| ||| ||| || ||||| || ||||||||| | ||| Sbjct 32033 AAGAAAAGGGTAATTGTAGATTTTTCCAGTCCCAACATTGCCAAGGAAATGCATGTGGGA 32092 Query 870848 CATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACAC 870907 || |||||||| ||||| ||||| || ||||| ||| |||||||| | |||||| Sbjct 32093 CACTTAAGATCTACTATAATTGGAGATAGTATTTCAAGGCTATTAGAATACTTAGGACAC 32152 Query 870908 GATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCT 870967 || || | | | ||||| | || || ||||| || || || ||||||||||| || Sbjct 32153 GACGTATTGAGACTCAATCACATAGGCGACTGGGGTACACAGTTTGGTATGTTAATAGCG 32212 Query 870968 TATATTAAAAATAA 870981 || || || |||| Sbjct 32213 CATCTTCAAGATAA 32226 >seq2796 Length=20616 Score = 98.7 bits (108), Expect = 8e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 || |||||||| || |||||||| |||||||| |||| ||| |||| || || || Sbjct 17483 CCATATGCAAGTGCAGCTGCAGTCGGTTCATTTATTACCCGAAGCACATTCAATCCAGCT 17424 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 || | | ||| ||| |||||||||| |||| ||||| |||||||||||||| ||| Sbjct 17423 ATCTGACCAGCATCCTTTGTTGCTTGTCGTTGTGAATCATTGAAATATGCTGGTACGGTA 17364 Query 322364 ATAACTGCTTTATT 322377 ||||| || || || Sbjct 17363 ATAACAGCATTCTT 17350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778996064287624