Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq13889 93.3 5e-14 seq7033 84.2 3e-11 seq6906 84.2 3e-11 seq24957 82.4 9e-11 >seq13889 Length=3816 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 141337 TTAGCTCAGAGGTAGAGCATCTCGTTTACACCGAGGCGGTCGGCGGTTCGATCCCGTCA 141395 |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1995 TTAGCTTAGAGGTAGAGCATCTCGTTTACACCGAGAGGGTCGGCGGTTCGATCCCGTCA 2053 >seq7033 Length=9266 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 141684 GTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCTCCGTGG 141743 ||||||||| |||||| ||||| ||||||||||||| ||| |||||||| |||||| Sbjct 1534 GTGGTCGAGCGGTTTAAGGCACCGGTCTTGAAAACCGGCGTAGGTGCAAGCCTACCGTGG 1475 Query 141744 GTTCAAATCCCACC 141757 |||| ||||||||| Sbjct 1474 GTTCGAATCCCACC 1461 >seq6906 Length=9444 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/89 (82%), Gaps = 5/89 (6%) Strand=Plus/Minus Query 22305 TTTTTGGGAGCGTGGCGGAATCGGTAGACGCACCAGACTTAAAATCTGTTGAG---AATT 22361 || ||| |||| ||||||||||||||||||||| |||||||||||| ||||| || Sbjct 9071 TTATTGCGAGCTTGGCGGAATCGGTAGACGCACAAGACTTAAAATC--TTGAGTTCCATA 9014 Query 22362 ATCTCGTGGGGGTTCAAGTCCCCCCGCTC 22390 |||||||||||||||||||| |||| Sbjct 9013 GGGACGTGGGGGTTCAAGTCCCCCAGCTC 8985 >seq24957 Length=1239 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 140961 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGAGTCCTA 141018 |||||||||||||||||||||| ||||||||||| || |||| ||||||||| ||||| Sbjct 499 TAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCATAGGTTCGAATCCTA 442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610115986952160