Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2779 116 2e-21 seq121 109 4e-19 seq1592 107 1e-18 seq12857 96.9 2e-15 >seq2779 Length=20704 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| |||| ||| ||||| || || || || ||||| ||| |||| ||| Sbjct 8623 ACCAGATGAAGTGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCTTCC 8682 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||||||||||||| || || || ||||| || | || | || |||||||| | Sbjct 8683 AGCTGTTTTCCGGCAAAGATCAGGCGCTGCTGATCAGGTGGAATGCCTTCCTTGTCTTGA 8742 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||| || |||| | ||| || || || || | ||| |||||||| Sbjct 8743 ATCTTGGCTTTAACATTCTCTATAGTGTCAGAAGCTTCTACCTCAAGGGTGATGGTTTTC 8802 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||||||| ||||| ||||| ||||| Sbjct 8803 CCAGTGAGAGTTTTCACGAAGATTTGCAT 8831 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||| ||||||| ||| ||| || ||||| ||||| || ||||| ||| |||| Sbjct 8163 CAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAAAGAGTTCTGCCATC 8222 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| || |||||||| || || |||||||| || | || | || || ||||| Sbjct 8223 TTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTTGTC 8282 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 || || ||| ||| | || | || || || || || | || ||||| Sbjct 8283 CTGGATTTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAATGGT 8342 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || ||||| ||||||||||||||||| Sbjct 8343 TTTGCCTGTAAGAGTTTTCACAAAGATCTGCAT 8375 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||| ||||| || || || || ||||| ||| |||| || Sbjct 8395 ACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCTTCA 8454 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| || || || || || || ||||| || | || | ||||| ||||| Sbjct 8455 AGTTGTTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGG 8514 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || || || | |||| | || || ||||| || | ||| |||||||| Sbjct 8515 ATTTTGGCCTTCACATTTTCTATGGTATCTGAAGCTTCAACTTCAAGGGTGATGGTTTTG 8574 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||||||||| |||||||||||||| Sbjct 8575 CCTGTGAGAGTCTTTACAAAGATCTGCAT 8603 >seq121 Length=74473 Score = 109 bits (120), Expect = 4e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| || |||||||| || || || | ||| |||| |||||||||||||| ||||| | Sbjct 8121 CTTTTTGGATGTTATAATCAGAGAGAGTACGTCCATCTTCCAGCTGTTTTCCAGCAAAGA 8180 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | ||||| ||||| ||| | || | ||||| || || |||||| ||| || | Sbjct 8181 TAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGAATCTTGGCTTTCACATTTT 8240 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | ||| ||| || || |||| || |||||||| || ||||| || || || | Sbjct 8241 CGATGGTATCAGAGGCTTCTACCTCGAGAGTAATGGTTTTACCAGTGAGGGTTTTGACGA 8300 Query 34972 AGATCTGCAT 34981 | |||||||| Sbjct 8301 AAATCTGCAT 8310 >seq1592 Length=29089 Score = 107 bits (118), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || |||||||||||||| ||||| ||||| | || | || || Sbjct 432 AACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTC 491 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||||||||| ||||| || | || |||||| ||| | || | || || || || Sbjct 492 AAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGGGGATGCCTTCTTTATCCTG 551 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| ||| |||||| || || |||| || || ||||| || | || ||||| Sbjct 552 AATTTTCGCTTTGAC--ATTCTCGATCGTGTCTGAAGCTTCAACCTCCAATGTGATGGTC 609 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| | || || |||||||||||||| Sbjct 610 TTTCCCGTCAAGGTTTTGACAAAGATCTGCAT 641 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || | || || | ||||| || | ||| ||| |||||||| || || || | Sbjct 641 TTCCGCCACGTAATCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGG 700 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | | | | ||| | || || |||||||| ||||| || || | || |||||||| | | Sbjct 701 ACAAGGTACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTG 760 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| ||||||| || ||| | || | ||| ||| |||| Sbjct 761 GAATACCCTCTTTGTCCTGAATCTTCGCCTTTACGTTCTCGATAGTGTCAGAGGCTTCAA 820 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||||| |||||||| || | ||||||||||| |||||||| Sbjct 821 CTTCGAGAGTTATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTGCAT 869 >seq12857 Length=4317 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || || || ||||| | || |||| || || |||||||| ||||| Sbjct 4081 TTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCTTCGAGTTGTTTTCCTGCAAA 4140 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||| || | || | || ||||| || ||| || |||||| Sbjct 4141 GATCAATCTCTGCTGATCCGGAGGGATACCTTCCTTATCCTGAATTTTGGCTTTGACATT 4200 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 |||||| ||| ||||| || || | || |||||||| || ||||||||||| || Sbjct 4201 CTCTATCGTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGAC 4260 Query 34970 AAAGATCTGCATA 34982 || ||||||||| Sbjct 4261 GAAAATCTGCATA 4273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324487986004512