Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_015691.1 Length=7632 Score E Sequences producing significant alignments: (Bits) Value seq8046 98.7 5e-17 >seq8046 Length=7925 Score = 98.7 bits (108), Expect = 5e-17 Identities = 301/461 (65%), Gaps = 6/461 (1%) Strand=Plus/Plus Query 1948 ATAGTAAAGTTTATAAGATTCCAGAATATTAATTTCATTATATTTCTAGATACTTTCAAA 2007 |||||||||||| |||| ||| | | ||| | ||| || | | | || || Sbjct 4063 ATAGTAAAGTTTTTAAGGCATCAGGGGGTAGAGTTCGTGTCATTCCTTGCTGCCTTTAAG 4122 Query 2008 CGTTTTCTAAAAAGTGTGCCCAAACAAAACACCCTTTTAATATGGGGGCCCCCAGATACA 2067 ||| ||||| |||||||||| | || | | | | | || || |||||||| Sbjct 4123 TCATTTTTAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTTTATGGACCTGCAGATACA 4182 Query 2068 GGGAAGTCCACATTCTCCATGTCCCTATTGAAAGCCCTAAAGGGCAGAGTGCTTTCATTT 2127 || || || |||| |||| || ||| | |||| ||| || | |||| | Sbjct 4183 GGCAAATCATATTTCTGCATGAGTCTTTTGCAGTTCCTAGGTGGCGCTGTAATATCATAT 4242 Query 2128 GTGAATTCCAGAAGCCAGTTTTGGTTGCAGCCTGTTGCAGAGTGCAAAATAGCTTTGCTT 2187 | |||||||| ||||| |||||| ||||||| | || || | || |||| | || Sbjct 4243 GCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCTGACAGTAAGATAGGACTACTG 4302 Query 2188 GATGATGCCACGGACC-CTGCGTGGACATATATAGACACGTTTCTGAGGAATGGTCTAGA 2246 || ||||| |||| || ||| ||||| ||||| || || | ||| ||||| ||||| Sbjct 4303 GACGATGCGACGGCCCAGTGC-TGGACGTATATTGATACATATCTTAGGAACCTACTAGA 4361 Query 2247 TGGTAACTGCGTGTCAATAGACTGTAAGCACAGGGCCC--CTACACAAGTAAGATTCCCT 2304 ||| ||| | | |||||| | || || | | ||| || || | ||| || ||| Sbjct 4362 TGGAAACCCCTTCAGTATAGACAGGAAACATAAGACCCTGCTGCAGA--TAAAATGTCCT 4419 Query 2305 CCCCTGTTGATAACGTCCAACTACAATATAATGGTAGAGGACAGATACAGGTATTTGCAT 2364 || | ||||||| ||||| ||| | | |||||||||| | |||||||| Sbjct 4420 CCATTAATGATAACAACCAACATAAATCCTCTAGAGGAGGACAGATGGAAGTATTTGCGC 4479 Query 2365 AGTAGGATAAGGGCATTTGAGTTTCCCAACAAATTTCCCTT 2405 || || ||| ||| ||||| ||||| ||||||||| Sbjct 4480 AGCAGAGTAACACTGTTTAAGTTTACCAACCCATTTCCCTT 4520 Score = 78.8 bits (86), Expect = 5e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 6571 AGTGGCTCCCTGGTGTCTTCTGATGCCCAATTATTTAATCGTCCCTTCTGGTTGCAAAGG 6630 |||||||| |||| || ||||| || |||||||| || | |||| ||| |||| Sbjct 712 AGTGGCTCTATGGTATCCTCTGAACAGCAGTTATTTAACAAGCCTTACTGGCTGCGAAGG 771 Query 6631 GCACAAGGACATAACAATGGCATATGCTGGCAGAATCAATTATTTGTCACCATGGTCGAC 6690 || || ||||||||||||||||| |||||| |||| | || | || |||| ||| Sbjct 772 GCCCAGGGACATAACAATGGCATGTGCTGGGGCAATCGGGTCTTCCTGACAGTGGTGGAC 831 Query 6691 AACACTCGTAACACCAAT 6708 | ||| || | ||| ||| Sbjct 832 ACCACGCGCAGCACAAAT 849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24297135725376