Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq532 104 3e-17 seq5929 96.9 4e-15 seq2380 82.4 9e-11 >seq532 Length=46805 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 ||||| || ||||||||||||||||| || ||||| || ||||| ||||| | |||||| Sbjct 27902 TACATCTCAGAATGAATATTTTCTATGGCGATCTGGAAGCCGTAGAAACAACGTGCTTCC 27843 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | || | || || || ||||| || | || ||| |||||||| |||||||| | Sbjct 27842 GCGATTTTCACCTCTTGACTGAATCTCTCAATCAGATTCTCATTAACGATTCCATCGGAA 27783 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGA 19421 || ||||| || || || ||||| ||||| | | |||| || || Sbjct 27782 GCAGCAAAGAACGCCAAGACATGAGAGATAAAGTATCTTTCGTCAGA 27736 >seq5929 Length=11024 Score = 96.9 bits (106), Expect = 4e-15 Identities = 156/222 (70%), Gaps = 13/222 (6%) Strand=Plus/Minus Query 47833 TTAA-TTTATTAAAATCAAA---CTTGTTATTTATA---ACAAACCTATTAAGTGCTATA 47885 |||| ||||| |||||| || ||||||||| || |||||| |||| | || ||| Sbjct 707 TTAAGTTTATCAAAATCGAAAGTCTTGTTATTCGTATTCACAAACATATTGACAGCAATA 648 Query 47886 GATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACAT 47945 ||||| |||||||| ||||| || || || || ||||| || | ||| | || Sbjct 647 GATGCCAGATTACACACAGCAACTTCCCCAGGGCCAGAGTATTGAATAACTTCGGTGCAC 588 Query 47946 AGATTACCACATTTGATAGTACCCAAATTTTGATGATTA---TTNNNNTTGTTACATGCG 48002 | ||| | |||||||| ||||| | | ||||||||| || ||| || Sbjct 587 AAATTGCTGCATTTGATTGTACCAATGTGCTGATGATTAGATTTTCGATTG---CAGTGA 531 Query 48003 TCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGAT 48044 |||||||||||||| |||| ||||||||||||| || ||| Sbjct 530 TCCTTGTAAAGCATGTAAGGAGTTCCAGTTTCTACTTGCGAT 489 >seq2380 Length=22946 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/149 (74%), Gaps = 8/149 (5%) Strand=Plus/Minus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 ||||||| || || |||||||||||||| ||||||||||| | |||||||| ||||| Sbjct 21293 CACTAAAAATCTTCTTTGTTTCTTTATGCAGATTAGATATGGCAATTCTAGCTGCTAAAG 21234 Query 48976 TAGCATAATCTGGATGAATTG-TTGTACATGTACTAGAT---ATTTCTGCTGCTAATATA 49031 | || ||||||| ||| ||| ||| || |||| | | ||||| || ||||| | Sbjct 21233 TTGCGTAATCTGCATG--TTGATTGATCA--TACTTGCTGCAATTTCAGCCGCTAAGTTG 21178 Query 49032 TCTAATTCTTTAGTAGTTACACCTGTATA 49060 || ||||| || ||||| || | ||| Sbjct 21177 TCCAATTCAACTGTTGTTACTCCAGAATA 21149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561850201846560