Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_016013.1 Length=7048 Score E Sequences producing significant alignments: (Bits) Value seq8046 95.1 5e-16 >seq8046 Length=7925 Score = 95.1 bits (104), Expect = 5e-16 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 5684 TATTGAGGATGGTGACATGGTTGATATTGGTTTTGGGGCAATGGATTTTAGAATTTTACA 5743 |||||||||||| || |||||||| | || || ||||| |||||||| | |||| Sbjct 411 TATTGAGGATGGGGATATGGTTGAAACCGGGTTCGGGGCCCTGGATTTTGCCGCTCTACA 470 Query 5744 G-CAAACTAAATCTGATGTTCCATTAGATATTTCAAATTCTGTATGTAAATATCCAGATT 5802 | | ||| ||||||||||| || | ||||||| | | ||||||||||||| || | Sbjct 471 GTCCAAC-AAATCTGATGTCCCCCTGGATATTTGTACTAACATATGTAAATATCCGGACT 529 Query 5803 ATATTCAAATGAACGGGGACCCATATGGAGACTCTCTCTTCTTCTTTGCACGTAGGGAGC 5862 || | ||||| | ||||| ||||| || ||| | ||||| | || ||||||| Sbjct 530 ATCTGAAAATGGCTGCTGACCCCTATGGCGATTCTATGTTCTTTTCCCTGCGCAGGGAGC 589 Query 5863 AAATGT 5868 | |||| Sbjct 590 AGATGT 595 Score = 91.5 bits (100), Expect = 7e-15 Identities = 223/333 (67%), Gaps = 5/333 (2%) Strand=Plus/Plus Query 2049 TTTAAAACAGTTTCTTAGAGGGATTCCCaaaaaaaaTTGCCTACTGTTTTACGGCCAACC 2108 ||||| || ||| | | ||| | ||||| || |||||| || ||||||| || | | Sbjct 4117 TTTAAGTCATTTT-TAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTTTATGGACCTGC 4175 Query 2109 AAATACTGGGAAATCCATGTTTACT--ATGAGTTTGATTCAATTTTTACATGGAAAGATT 2166 | |||| || ||||| || ||| || |||||| | | || || || ||| | Sbjct 4176 AGATACAGGCAAATC-ATATTT-CTGCATGAGTCTTTTGCAGTTCCTAGGTGGCGCTGTA 4233 Query 2167 TTGTCTTTTTTAAATTCTAAAAGCCAGTTTTGGCTCCAGCCTTTGGCCGATTGCAAAATT 2226 | || | | ||||| | ||||| |||||||| ||||| || || || | || || Sbjct 4234 ATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCTGACAGTAAGATA 4293 Query 2227 GCATTAATAGATGATGCCACCGAAAATTGTTGGTCTTACATAGATGTATATTTACGTAAT 2286 | | || | || ||||| || | | || ||| | || || ||| |||| | | || Sbjct 4294 GGACTACTGGACGATGCGACGGCCCAGTGCTGGACGTATATTGATACATATCTTAGGAAC 4353 Query 2287 GCATTAGATGGAAACCCAATCTGTATTGACTGTAAGCATAAAGCTCCATTGCAAATAAAA 2346 | ||||||||||||| || |||| ||| | || ||||| | | |||| |||||| Sbjct 4354 CTACTAGATGGAAACCCCTTCAGTATAGACAGGAAACATAAGACCCTGCTGCAGATAAAA 4413 Query 2347 TGTCCACCTTTGTTAATAACATCAAATATAGAT 2379 ||||| || || | |||||| | || ||| || Sbjct 4414 TGTCCTCCATTAATGATAACAACCAACATAAAT 4446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 22429109492672