Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq9276 491 1e-134 seq24957 127 6e-25 >seq9276 Length=6644 Score = 491 bits (544), Expect = 1e-134 Identities = 960/1404 (68%), Gaps = 42/1404 (3%) Strand=Plus/Plus Query 30411 ACTTGATGATGAGTGAAGGTTTGCCGAGTTTTATTTGCGCGCCAGGTACATCCACGCCAG 30470 |||||||||| | ||| |||||||| || ||||| || || ||||| || | | || | Sbjct 4403 ACTTGATGATTAATGATGGTTTGCCAAGCTTTATCTGAGCACCAGGAACGGCGATTCCTG 4462 Query 30471 CTTCTATTTGGTGTTTGATAGCCAATTTGTCTGGCTTGATGCTCGTCTCGTATTCGACGA 30530 | || | || || |||||||||| || |||||||||| | ||||| || || |||| Sbjct 4463 CGTCCAGCTGATGCTTGATAGCCAGCTTATCTGGCTTGACGACTGTCTCATACTCAACGA 4522 Query 30531 ATTCAGGAGGAAGTGCGCTGGCATCTGTAATCTCTACTGACTTG---GAAGGCGCGCGAA 30587 ||||| || || ||||| || || || || |||| || || | |||| Sbjct 4523 ATTCAATCGGCAGGATAGATGCATCAGTGATATCAAC---CTTGCGGGATGGAACACGAA 4579 Query 30588 CCGTTACCTGATGAATGCCTGCCTTCAGTGATTTCTTTCCTGCTGTTTCGAGGGAGGTGG 30647 | ||||| || || | ||| || | ||| ||||| || ||||| || || || ||| Sbjct 4580 CAGTTACTTGGTGCAAGCCCGCTCGGATTGACTTCTTCCCGGCTGTCTCAAGCGATCTGG 4639 Query 30648 CCACATAATCTTTCATGCTCGACACACGGTTTTCTGCGGCTTTTG-CGCGCTCTGCA--A 30704 | | || || || ||||| || | |||||| | || | ||| || | || | Sbjct 4640 CTATGTACTCCTTGATGCTTGAAATCTTGTTTTC---GACTACCGACGCTCTTTCCAGTA 4696 Query 30705 GACGCTTGCTTTCTTCTCTCAGCGCCTCGGCATA-AGCAGATTCGTTTTTGCAGACAGCA 30763 | ||| ||| | |||| ||||| ||||| ||| | | |||||||||||| ||| Sbjct 4697 GTGACTTTGATTCATTCCTCAAAGCCTCAGCATAGAGCTGCT-CGTTTTTGCAGATGGCA 4755 Query 30764 AGGATCTGCTCGACCTTTGCTTCCAGCTCCCACTCAATGCCATCAAGGGTGTCGGCTATC 30823 || | |||||| ||||| | | ||||| | ||||| || || | |||||||| ||| Sbjct 4756 AGCAACTGCTCTACCTTATCAACGAGCTCGCCATCAATTCCTTCGATAGTGTCGGCGATC 4815 Query 30824 ATTTCAGGCTCCATGCCTGAATCAGTCAGCTTTGCGAAATCATTGGCGATCTGGTAAAGA 30883 || || ||||| | || ||||| | ||||| ||| ||||||| ||||| | ||| || Sbjct 4816 ATCTCTGGCTCTAAACCGGAATCCATGAGCTTCGCGTAATCATTTGCGATGTCGTATAGC 4875 Query 30884 GCTGTCATTGCGTAACCTCTTCGAATTTTGCTTTGCACTTGGCATAGACGGCCTGAACCT 30943 |||| ||| | |||| | | || |||| || | ||||| ||||||||| | Sbjct 4876 TTGCTCATGACGTCGCTCCTTCAAGCTGCGCCTTGCGCTCTGAATAGATGGCCTGAACAT 4935 Query 30944 CTTGTTGAAGCTGCATTCCGACCGTCATTTTGTAAGCTGCCTGGAAGTGAGTTTTGAGAG 31003 || ||||||| ||| || || | ||| | || | ||| | ||||| Sbjct 4936 TCTGCTGAAGCTTCATGCCACGAGTTAACTTGAACGCATCAGCGAATAATGGCTTGAGTT 4995 Query 31004 CATGCATGTTTTTCGCCTGCTTC-ATGTCCTCACATAGTGACTGGATGGTGTTGATAAGT 31062 ||| |||| ||| | | ||||| || | || || | | | | | | || Sbjct 4996 CATCCATGCTTTCTGAC-GCTTCCATCTTCTGGCAGATTCCTTCTACCAGCTCGTAAACC 5054 Query 31063 TCCTGTTT---TGCGTTTTCTTCTGACTGGATGATTTCGCTTTCAGGGGTGTATGGCATA 31119 ||||| || ||| || || || | ||| | |||||||||||| |||| ||||| Sbjct 5055 TCCTGCTTACGTGCATTCTCACCT---TCGATAACTTCGCTTTCAGGCGTGTGCGGCATT 5111 Query 31120 ACTGGCTCGGTGTATATGCCTTCGCTTTCGTTGAGCACATCGACGGCATTATCCAGTCGG 31179 | ||||| || |||||||| ||||||||| || | | ||||||||||| || Sbjct 5112 ATCGGCTCTTGGTGCATGCCTTCCTCTTCGTTGAGGACGTGAATTGCATTATCCAGGCGC 5171 Query 31180 TCGGCACGCGGCCAGTATTTATAGGCTCTCTTGACGATCGTCTTCCTGGCCATCTCAGAC 31239 ||||| |||||||||||||| || | ||||||||| ||||| | ||||| || | | Sbjct 5172 TCGGCGCGCGGCCAGTATTTGCTTGCCCGCTTGACGATTGTCTTACGCGCCATTTCCGCC 5231 Query 31240 CAGAAGTTGACCCATGGGCCTTTTGGTGATGTTCCCGCTTTGCTCACTTTCCTGATTTCT 31299 ||||| | ||| ||||| || || | | | | ||| || | || | Sbjct 5232 CAGAACGTCTTCCACGGGCCGTTCTTTGCCTTACTGG--TAGCT-----TC--GGTTGCC 5282 Query 31300 TCTATCTCAGCGAGACTCATCTCTTCAGTGAGATAGTCGCCATCAGCGGTTTTAACTGTG 31359 | |||||| ||||| ||||| || || || ||||| || || || | || ||||| ||| Sbjct 5283 TTTATCTCTGCGAGGCTCATTTCCTCTGTTAGATAATCTCCGTCGGGAGTCTTAACAGTG 5342 Query 31360 CAGTAGCCACCGATAACGGCACCGCGAGCGTCAGGCGTGGCAAACGGGTTGTATTTATGA 31419 |||||||| |||| || |||||||| || | || | |||||| |||||| Sbjct 5343 CAGTAGCCGCCGACTACATCACCGCGATCGCCG---------AAAGCGTTGTACTTATGA 5393 Query 31420 GCTGGCGCCTTATCGAGACCTAATGTCTCGTAGTCGTCGCTTGCATGAACTAGCTTGCAC 31479 | ||||| |||| || || | |||||| ||| | | | ||| ||||||||| Sbjct 5394 GTAGGCGCGCTATCCAGTCCATTCGATTCGTAGGTATCGTTCGAGTAAACCAGCTTGCAC 5453 Query 31480 TGACCCCACTTGAT-GACGCCAGCCGACTGGGCGATGTGTAGAAGGCCCATATAGCTGAT 31538 || |||||||| || ||| || | | ||| |||| || ||||| |||||||||||||| Sbjct 5454 TGTCCCCACTTAATCGAC-CCGGTAGCCTGAGCGAGATGAAGAAGCCCCATATAGCTGAT 5512 Query 31539 ATCGAGGCAGACCATACCGTCGCGCGGAACCAGATAAGCCAGTTTGCTGGCAGGGTTCAG 31598 |||||||| ||||| || || |||||||| || || ||||| || ||||| |||||||| Sbjct 5513 GTCGAGGCACACCATCCCATCTCGCGGAACGAGGTATGCCAGCTTACTGGCTGGGTTCAG 5572 Query 31599 GCTAATGCCGACAGCTGCAACGTTGATAATCGCGTTCTGGGCGCTGGTGGGGTTGGCAAT 31658 | ||||| | || ||||||||||||||||||||||| ||||| | || || | || Sbjct 5573 CGTTATGCCAATTGCCGCAACGTTGATAATCGCGTTCTGCGCGCTTGCCGGATTCCCGAT 5632 Query 31659 CGCCGTTTCTGCCAGTTTTTGATTGCGCTGGAATAACTGGATGGCGAACTGGCATTCCTT 31718 |||||||| | ||| | ||| |||||| | || || |||||||||| |||||| Sbjct 5633 CGCCGTTTTCGTCAGGAAATCATTCTTCTGGAAAAGTTGCATCGCGAACTGGCTTTCCTT 5692 Query 31719 TGCCCAAGTCAGAGACTGGTCGGTAAGGGCTCCGACAAAAAGCGGCTCCTGCTCCTTTAC 31778 ||||| || | || ||||| || || || ||| ||| | ||| ||||||| || || Sbjct 5693 CGCCCATGTAACTGATTGGTCAGTCAGCGCGCCGCTAAATAACGGTTCCTGCTGTTTCAC 5752 Query 31779 GAACTGAATCAGATCGAAGCTCAT 31802 ||| | ||| | ||||||||| Sbjct 5753 GAATTCAATGATGCTGAAGCTCAT 5776 >seq24957 Length=1239 Score = 127 bits (140), Expect = 6e-25 Identities = 157/213 (74%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 25962 CTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATTTAAAAACAGTCGC 26021 ||||||||||||||||| ||||||||||||||| ||||||||||||| | | || | Sbjct 474 CTTCTAAGCCGTAGGTCATAGGTTCGAATCCTATAGGGCGTGCCATTAAGTATCAATGAG 415 Query 26022 TTACGCCAGTTTCAAGCCAGCCTG--ATTTTCTCCTTGTGTCGTATTTGTGTCATGGTTG 26079 ||||||| ||||| || | | | |||| | || | | ||||| | | Sbjct 414 TTACGCC--TTTCATCCCGTCTTTCCAATTTCATCATGGGACAGATTTGGGACTAAACCT 357 Query 26080 CCAAAAATGGCATCAATTTTCCGTGCGTGTTCGCTTAAGTGGTTCGGTGCCAGGTGAGCG 26139 || ||||| |||||||||| || || || || | | ||||||||||| ||||||| | Sbjct 356 CCGAAAATCGCATCAATTTGCCTCGCATGCTCAGTGAGATGGTTCGGTGCAAGGTGAGTG 297 Query 26140 TATCGACGTACCATTTCGATGGACTCCCAGCCG 26172 ||||| |||||||||| ||| |||||||||| Sbjct 296 TATCGCTGTACCATTTCTATGCTCTCCCAGCCG 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158452318531024