Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_016566.1 Length=44077 Score E Sequences producing significant alignments: (Bits) Value seq680 178 4e-40 >seq680 Length=42727 Score = 178 bits (196), Expect = 4e-40 Identities = 458/697 (66%), Gaps = 28/697 (4%) Strand=Plus/Plus Query 743 TGCCGCACCAGGTTGAACTACTGCGCGACACAAAGACTAAAATCCTCGGCCTGTGTTCCG 802 ||||||||||| | || |||||| |||| | ||| ||||| ||||||||||| || | Sbjct 33339 TGCCGCACCAGTTCGACCTACTGGAAGACATCACGACGAAAATTCTCGGCCTGTGCTCGG 33398 Query 803 GCTTCGGTGGCGGAAAGTCGTGGGTAGCTGCGCGTAAGGTCATCCAGCTTCTGACACTTA 862 ||| || ||||| || | ||||| || | |||||| | |||||||| ||| | | Sbjct 33399 GCTATGGCGGCGGTAAAACTTGGGTCGCGGTGCGTAAAGCGATCCAGCTGATGATTTTGA 33458 Query 863 ACCCTGGTTATGACGGCATCGTGACCGAACCGACTATTCCACTCCTGGTTAAAA----TC 918 | || || | ||||| || | ||||||||||| ||||| ||||| | Sbjct 33459 ATCCGGGGTGCGACGGTATGATTACCGAACCGACGCACCCACT----GTTAACGCAGGTG 33514 Query 919 ATGTATCCGGAACTGGAGAAGGCATTCGACGAGGCTGGCTTCCGGTGGAAGTTCAATAAG 978 | ||||| ||||| || | ||| | || ||| ||| | || | ||||| || ||| Sbjct 33515 CTTTATCCCGAACTTGAAACGGCGCTTGATGAGTACGGCATTCGATACAAGTTTAACAAG 33574 Query 979 CAGGATAAGATCTACAATGTGCTGGT----------GAAAG------GCAAATGG---AC 1019 ||| ||||| | | ||||||| |||| |||| | || Sbjct 33575 GTGGAGAAGATTTTTAC-GTGCTGGGTTTGGGATGAGAAAATCCAGCGCAACCGCCGCAC 33633 Query 1020 ACGCGTTATCTGTGAATCAATGGAGAACTATACCCGCCTGATCGGGGTCAACGCCGCGTG 1079 ||| | ||||||| ||| ||||| ||||||| ||| | |||| || ||||||||||| Sbjct 33634 ACGTATCATCTGTGCATCGATGGAAAACTATAAACGCTTAGTCGGTGTTAACGCCGCGTG 33693 Query 1080 GATTGTTGCCGATGAATTCGACACTACGAAGCAAGACGTCGCGCTGGCGGCATATCACAA 1139 | ||| || || |||||||| || | | |||||||| ||| | || Sbjct 33694 GTGTGTGATGGACGAGTTCGACACCTCGGCGGAGGACGTCGCATATATGGCGTTCGTGAA 33753 Query 1140 ATTGCTCGGTCGTCTGCGTGCGGGCTTCGTCCGCCAGTTCGTCATCGTGTCAACGCCTGA 1199 | |||| |||||||||||| || || |||||| | | || ||||| || ||||| Sbjct 33754 ACTGCTGGGTCGTCTGCGTCGCGGTAAAGTGCGCCAGATGATTATTGTGTCCACACCTGA 33813 Query 1200 AGGCTACCGGGCGATGTACCAAATTTTCGAGGTGGAGAAAGACAACCAGAAACGCTTGAT 1259 ||| | ||| |||||||||| || |||| ||| ||| | ||| || | || Sbjct 33814 AGGTTTCCGCGCGATGTACCGCATCTTCGTCACTGAGTTGGACGAGATGAAGCGGCTTAT 33873 Query 1260 CCGGGCGAAGACCACGGACAACCACCATTTACCGGCAGACTTTATCGACACGCTCCGTAG 1319 | |||||||| ||||||| ||| | |||| ||||| |||| | |||||| | Sbjct 33874 CAAAGCGAAGACGCGCGACAACCCGCATCTGCCGGAAGACTATATCAAGACGCTCGAAAA 33933 Query 1320 TCAGTACCCAGCTAACCTGATCGACGCGTACCTGAACGGCCTGTTTGTTAACCTTACGTC 1379 || ||| | | || | || |||||||| |||||| ||| || ||| | ||| | Sbjct 33934 ACAATACTCGAAAGAGTTGGTAGAGGCGTACCTAAACGGCGAGTTCGTCAACATGACGGC 33993 Query 1380 GGGCGCGGTATACAAGATGTTCAACCGCGAGGAGAAC 1416 ||| | ||| | | |||| ||||| || |||| Sbjct 33994 GGGTATCATTTACCATACGTTCGACCGCAAGCTGAAC 34030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140863209168472