Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_017862.1 Length=7582 Score E Sequences producing significant alignments: (Bits) Value seq8046 98.7 5e-17 >seq8046 Length=7925 Score = 98.7 bits (108), Expect = 5e-17 Identities = 185/272 (68%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 2028 GGACCACCTGATACAGGAAAATCATTATTTTGTATGAGTCTTCTGCATTTTGCAGGAGGC 2087 ||||| | |||||||| ||||||| || || ||||||||| |||| || ||| ||| Sbjct 4168 GGACCTGCAGATACAGGCAAATCATATTTCTGCATGAGTCTTTTGCAGTTCCTAGGTGGC 4227 Query 2088 AAAGTGCTTTCCTATGCAAACTCAAAAAGCCACTTTTGGCTACAGCCTATGTTAGACGCC 2147 || | || ||||| || || | |||||||||||||| ||||| | ||| Sbjct 4228 GCTGTAATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCTGACAGT 4287 Query 2148 AAGATGGTCCTACTAGATGATGCTACCAAACCATGCTGGGACTATATGGACACCCATCTC 2207 ||||| | ||||| || ||||| || | |||||| ||||| || || |||| Sbjct 4288 AAGATAGGACTACTGGACGATGCGACGGCCCAGTGCTGGACGTATATTGATACATATCTT 4347 Query 2208 AGAAATCTTTTTGATGGTAACCCAGTTAGCGTGGACGCCAAGCATAAAGCACTTCAGCAA 2267 || || || | ||||| ||||| | || | ||| || ||||| | || | ||| Sbjct 4348 AGGAACCTACTAGATGGAAACCCCTTCAGTATAGACAGGAAACATAAGACCCTGCTGCAG 4407 Query 2268 ATGAAGTGTCCTCCGCTGCTCATTACAACAAA 2299 || || |||||||| | | || ||||| || Sbjct 4408 ATAAAATGTCCTCCATTAATGATAACAACCAA 4439 Score = 82.4 bits (90), Expect = 4e-12 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 6178 ACACCCAGTGGCTCTTTGGTTAGTACTGAAACATCTATT-TTTAACAAGCCATACTGGCT 6236 || |||||||||||| |||| ||||| || | || ||||||||||| |||||||| Sbjct 706 ACTCCCAGTGGCTCTATGGTATCCTCTGAA-CAGCAGTTATTTAACAAGCCTTACTGGCT 764 Query 6237 GCAACGTGCACAAGGCCAGAACAATGGTATCTGCTGGCATGAGCAGCTGTTTGTGACAGT 6296 || | | || || || || |||||||| || |||||| | | | | || ||||||| Sbjct 765 GCGAAGGGCCCAGGGACATAACAATGGCATGTGCTGGGGCAATCGGGTCTTCCTGACAGT 824 Query 6297 GGTTGACACCAC 6308 ||| |||||||| Sbjct 825 GGTGGACACCAC 836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24137201972576