Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_017974.1 Length=149273 Score E Sequences producing significant alignments: (Bits) Value seq20287 93.3 4e-14 >seq20287 Length=1926 Score = 93.3 bits (102), Expect = 4e-14 Identities = 207/300 (69%), Gaps = 8/300 (3%) Strand=Plus/Plus Query 111143 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTG-G 111201 ||||||||||| ||||| | ||| ||||| |||| ||| | ||| | || || || | | Sbjct 264 GCGATCGCATTGATGGTGAGGTCGCGGCGAGCCAGATCTTGTTCCAACGTTACGTCGGCG 323 Query 111202 GCTGAACATCACCTCGAAATCGTGGTATCCTGCGCCAG-TTGAACGCTCGGTACGGGCAA 111260 || | | | |||| ||| | || || || ||| | | || |||||||| ||||| | Sbjct 324 GCAGCATAA-ACCTGGAACCCATGATAGCC-GCGACCGCTTTTGCGCTCGGTGCGGGCCA 381 Query 111261 GGACGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAATGCGGCACCGACTTGCT 111320 | | || || || ||||| || |||||| | ||||| || | || || || Sbjct 382 GTGCATATTCCTCGCCCGTCTCCGGGTGCAGGAACACTGGAAAATCCTTGCCTACC-GCG 440 Query 111321 CGAA-GCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCT 111379 |||| ||| | ||| ||| || ||| || | ||| ||||| || ||||| ||||| Sbjct 441 CGAAAGCCCAAGCCCAGCATTTCCTCGGGGTCGCTGCCCACCACGACATAGTCGCGGTCA 500 Query 111380 -TTGCTCTCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCAGATAGATTTTCAT 111438 || | | | |||| ||| ||||||| ||||||||||||| |||||| || | ||| Sbjct 501 GTTACCGGCCGC-CCCAGCAGCGCATCGCGCACCGCGCCGCCGATCAGATAAATCTGCAT 559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477325905146720