Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_018074.1 Length=7596 Score E Sequences producing significant alignments: (Bits) Value seq8046 149 3e-32 >seq8046 Length=7925 Score = 149 bits (164), Expect = 3e-32 Identities = 321/472 (68%), Gaps = 6/472 (1%) Strand=Plus/Plus Query 2495 TACAGACGTGCAGAAATGAACAAAATGACTATGGGACAGTGGATAAAGCATAGGAGCGAA 2554 |||| |||||||| | | | |||||| |||| | |||||||| || ||| || || Sbjct 3973 TACAAGCGTGCAGAGAGGGAACAAATGAGTATGAGCCAGTGGATCAAATTTAG-AGGGAG 4031 Query 2555 -AAGACACATGGGGAGGGAAATTGGAAAGAGATCTTCAAGTTTTTAAAGTTTCAAGGCAT 2613 |||| | | ||| ||| ||||||| || | |||||||||| | ||| || | Sbjct 4032 CAAGATATCAGAGGAAGGAGATTGGAAGCCTATAGTAAAGTTTTTAAGGCATCAGGGGGT 4091 Query 2614 AGAAATAACTTCATTTCTAACATATTTTAGGTTGTTTTTAAAAGGTGTGCCTAAAAAGAA 2673 ||| | ||||| || | |||| || ||||||||||||||||| || ||||| Sbjct 4092 AGAGTTCGTGTCATTCCTTGCTGCCTTTAAGTCATTTTTAAAAGGTGTGCCCAAGAAGAA 4151 Query 2674 CTGTATAGCCATCTGTGGACCCCCAAACACAGGAAAGTCCCTATTT-GGCATGAGCCTAA 2732 || |||| | | |||||| || | ||||| || | | ||||| ||||||| || Sbjct 4152 TTGCATAGTGTTTTATGGACCTGCAGATACAGGCAAAT-CATATTTCTGCATGAGTCTTT 4210 Query 2733 TAGATTTTATAGATGGCAGGGTGATTTCCCATTGTAATTCCAATAGCCACTTTTGGTTGC 2792 | | || ||| |||| || || || || ||||||| ||||||||||||| ||| Sbjct 4211 TGCAGTTCCTAGGTGGCGCTGTAATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGC 4270 Query 2793 AGCCATTAACAGAGTGCAAATTGGCTCTGTTAGATGATGCCACACCACCAACGTGGGAC- 2851 |||| ||| | || | || | | || | || ||||| || | ||| | |||| Sbjct 4271 AGCCCTTAGCTGACAGTAAGATAGGACTACTGGACGATGCGACGGC-CCAGTGCTGGACG 4329 Query 2852 TACTTTGACACATATCTTAGGAACCTAGCAGATGGCAACCCAGTGTCTGTAGATACTAAG 2911 || |||| |||||||||||||||||| |||||| ||||| | | |||| | || Sbjct 4330 TATATTGATACATATCTTAGGAACCTACTAGATGGAAACCCCTTCAGTATAGACAGGAAA 4389 Query 2912 CACAGGGCCCCTACGCAGATGAAATGCCCCCCTCTGCTCATAACCACAAACA 2963 || | | ||| |||||| ||||| || || | | ||||| || |||| Sbjct 4390 CATAAGACCCTGCTGCAGATAAAATGTCCTCCATTAATGATAACAACCAACA 4441 Score = 82.4 bits (90), Expect = 4e-12 Identities = 181/267 (68%), Gaps = 11/267 (4%) Strand=Plus/Plus Query 6958 ACGCCCAGTGGCTCTCTAATTTCTAGTGATGGGCAACTTTTTAACAGGCCTTATTGGATT 7017 || |||||||||||| | | || ||| ||| | ||||||| |||||| ||| | Sbjct 706 ACTCCCAGTGGCTCTATGGTATCCTCTGAACAGCAGTTATTTAACAAGCCTTACTGGCTG 765 Query 7018 CAAACTGCACAGGGCAAAAACAATGGTGTGTGCTGGGGAAATGAACTGTTTGTTACTGTG 7077 | || || ||||| | |||||||| |||||||||| ||| | || | || ||| Sbjct 766 CGAAGGGCCCAGGGACATAACAATGGCATGTGCTGGGGCAATCGGGTCTTCCTGACAGTG 825 Query 7078 GTTGACAACACCAGAAACACAAATGTCACAATCTCTGTCTTAAATCCAGaaaaaaaGGAT 7137 || |||| ||| | | |||||||||| ||| ||| | | | | ||| | Sbjct 826 GTGGACACCACGCGCAGCACAAATGTC----TCTTTGTGTGCCA--CTGTAAACA---CA 876 Query 7138 GAAACCACATATGATGCTGCAAATTATAATGTCTACACCAGACATATGGAGGAATATGAG 7197 ||||| | ||| | || | |||||||| | ||| || ||||||||||| ||||| Sbjct 877 GAAACTAATTATAAGGCCTCCAATTATAAGGAATACCTTAGGCATATGGAGGAGTATGAT 936 Query 7198 TT-CAGCTTTGTATTCCAACTATGCAA 7223 || ||| || | || ||||| ||||| Sbjct 937 TTGCAG-TTCATTTTTCAACTGTGCAA 962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24181983423360