Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_018075.1 Length=7635 Score E Sequences producing significant alignments: (Bits) Value seq8046 120 1e-23 >seq8046 Length=7925 Score = 120 bits (132), Expect = 1e-23 Identities = 418/641 (65%), Gaps = 16/641 (2%) Strand=Plus/Plus Query 2332 TTATCCAACATGGTGCAGTGGGCATATGACAATGACTTTGTCGAGGAATGTACAATTGCA 2391 ||||| ||||||||||| ||||||||| ||||| | || || | || | ||| Sbjct 3808 TTATCTGTCATGGTGCAGTACGCATATGACCATGACATAACGGACGAGAGCGCACTGGCA 3867 Query 2392 TATGAATATGCATTATTGGCAGATGAAGACAAAAACGCAGAAGCGTTTCTGCGTAGCAAT 2451 | ||| || ||| |||| || | ||| || || | ||| ||||| ||||| Sbjct 3868 TTTGAGTACGCACAGCTGGCGGACGTGGACGCCAATGCGGCAGCATTTCTAAACAGCAAC 3927 Query 2452 AATCAATCAAAACATGTTAAAGATAGTGCAAATATGTGCAAGTTGTATAAGCGAGCAGAA 2511 || | || | | ||||| | | ||||||| || ||||| ||||| Sbjct 3928 TGCCAGGCCAAGTACCTAAAAGACGCGGTGACAATGTGCAGACACTACAAGCGTGCAGAG 3987 Query 2512 ATGaaaaaaaTGACCATGCACCAGTGGATAAAGCATTGCAGTGAGAAA-ATAGAAGGTGA 2570 | | || |||||| ||| ||||||||| || | | || ||| || ||| || || Sbjct 3988 AGGGAACAAATGAGTATGAGCCAGTGGATCAAATTTAG-AGGGAGCAAGATATCAGAGGA 4046 Query 2571 CGGTGACTGGAAACCTATTTTAAAGTTCTTAAAGTACCAAGGCATAGAAGTAATGGACTT 2630 || || ||||| ||||| ||||||| |||| | | || || |||| | || || Sbjct 4047 AGGAGATTGGAAGCCTATAGTAAAGTTTTTAAGGCATCAGGGGGTAGAGTTCGTGTCATT 4106 Query 2631 TATTGGTATCCTTAAGCAATTTTTAAAAAGAACACCTAAAAAGAATTGCCTAGTTATCTA 2690 ||| | | ||||| |||||||||| | || || ||||||||| |||| | || Sbjct 4107 CCTTGCTGCCTTTAAGTCATTTTTAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTTTA 4166 Query 2691 TGGACCACCAGACACAGGCAAATCGCTGTTTGGCATGAGCTTTATAAGCATGCTGCAGGG 2750 |||||| |||| ||||||||||| || ||||||| || | ||| | | | || Sbjct 4167 TGGACCTGCAGATACAGGCAAATCATATTTCTGCATGAGTCTTTT--GCA-GTTCCTAGG 4223 Query 2751 GAAAACT---ATCTCCCACGTGAATAGCACCAGCCATTTTTGGCTGCAGCCGTT-GCTGG 2806 || || || | | ||| || ||||| |||||||||||||| || ||| | Sbjct 4224 TGGCGCTGTAATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCT-G 4282 Query 2807 ATTGCAGGGTGGCCATGTTAGATGATGCAACGGAAAGCACGTG--GGAC-TACTTTGACA 2863 | | | | | | | | || ||||| |||| | ||| |||| || |||| | Sbjct 4283 ACAGTAAGATAGGACTACTGGACGATGCGACGG---CCCAGTGCTGGACGTATATTGATA 4339 Query 2864 AATACCTTAGAAACCTTTTAGATGGAAATCAGGTCTGCATAGATGCAAAACATAAGGCAC 2923 ||| ||||| ||||| |||||||||| | || | ||||| ||||||||| | | Sbjct 4340 CATATCTTAGGAACCTACTAGATGGAAACCCCTTCAGTATAGACAGGAAACATAAGACCC 4399 Query 2924 CAACGCAGTTTAAAAGCCCACCATTACTGATAACCACAAAC 2964 |||| | ||| | || |||||| ||||||| || ||| Sbjct 4400 TGCTGCAGATAAAATGTCCTCCATTAATGATAACAACCAAC 4440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24306731750544