Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_018076.1 Length=7348 Score E Sequences producing significant alignments: (Bits) Value seq8046 181 5e-42 >seq8046 Length=7925 Score = 181 bits (200), Expect = 5e-42 Identities = 634/974 (65%), Gaps = 47/974 (5%) Strand=Plus/Plus Query 6066 TGCCAGACCCCAATAAATTTGGACTACCTGATTCAGACCTATATGATCCTGATAAAGAAA 6125 |||| ||||||||||| ||||| || |||||| | |||| |||||||| || | | Sbjct 68 TGCCGGACCCCAATAAGTTTGGTCTGCCTGATGCCAACCTCTATGATCCCGACACCCAGC 127 Query 6126 GGCTGGTATGGAGTTGTATAGGCACAGAAATTGGAAGGGGACAGCCCCTTGGTGTTGGTG 6185 | ||| | ||| ||| | || || | || | || ||||| || ||||| || Sbjct 128 GTCTGCTGTGGGCCTGTGTCGGAGTTGAGGTGGGTCGTGGCCAGCCTCTGGGTGTGGGGA 187 Query 6186 TTAGTGGACACCCCTTGCT-TAATAGGTTTGATGACACTGAAAATCCTTCTAAATACAAT 6244 | || ||||| || || ||| || | ||||| ||||||||| | | ||||| Sbjct 188 TATCCGGTCACCC-TTACTATAACAGACTGGATGATACTGAAAATGC------ACACAAT 240 Query 6245 CCC---ACTCCTGGAACTGATAGTAGACAAAATGTGTCTATGGACTACAAACAAACCCAG 6301 ||| || ||| |||| | || | ||| | || ||||| || ||||| || ||| Sbjct 241 CCCGACACAGCTGA---TGATGGGAGGGAGAATATATCCATGGATTATAAACAGACACAG 297 Query 6302 TTGTTTATGATAGGCTGCACCCCTCCTTTGGGTGAGCATTGGGCGAAAG-CTTTAGATTG 6360 ||||||| | || |||| |||||| | ||||| |||||| | || | | || Sbjct 298 CTGTTTATTTTGGGATGCAAGCCTCCTATAGGTGAACATTGGTCCAAGGGCACTAC---- 353 Query 6361 TTCTCCAGAGCGCCATACCA-----GTGAGTGCCCACCCATTGAACTTATTACTAGTGTG 6415 || ||| | | ||| |||| || || ||| || | ||| | | Sbjct 354 --CTGCAGCGGGTCATCTGCTGTTGGTGACTGTCCTCCCCTTCAGTTTACAAACACCACT 411 Query 6416 ATTGAAGATGGTGACATGGTGGATACAGGGTTTGGGGCCTTAGACTTTAAAACCTTACAA 6475 ||||| ||||| || ||||| || || ||||| |||||| | || ||| | |||| Sbjct 412 ATTGAGGATGGGGATATGGTTGAAACCGGGTTCGGGGCCCTGGATTTTGCCGCTCTACAG 471 Query 6476 TCCAACAAGTCTGAAGTGCCACTGGATATTTCCCAGAGTATCTGTAAGTATCCTGACTAT 6535 |||||||| ||||| || || |||||||||| | || ||||| ||||| |||||| Sbjct 472 TCCAACAAATCTGATGTCCCCCTGGATATTTGTACTAACATATGTAAATATCCGGACTAT 531 Query 6536 GTGAAAATGGCTTCAGACCAATATGGAAACAACCTATTCTTTTACATTAGACGTGAACAG 6595 ||||||||||| | |||| ||||| | | ||||||| | | | | || ||| Sbjct 532 CTGAAAATGGCTGCTGACCCCTATGGCGATTCTATGTTCTTTTCCCTGCGCAGGGAGCAG 591 Query 6596 ATGTTTACCAGACACTTTTTTGCAAAGGCAGGTACAGTTGGGGAAGATGTGCCACAGGAC 6655 ||||| ||| | || |||||| || || | | || || | | || |||| Sbjct 592 ATGTTCACCCGGCATTTTTTTAATCGGGGTGGGTCGATGGGTGACGCCCTCCCGGAGGAG 651 Query 6656 ATGATA-CTTAAAGGCACTGGTGGTCAGAAGCAGGAGAACACAGCCCCTTACTCCTATTT 6714 | ||| | ||| | || | |||| | | | | | |||| ||| Sbjct 652 CT-ATATGTCAAAAGTTCTACCGTCCAGACCCCCG-GTAGTTA--TGTTTACACCT---- 703 Query 6715 TGGAACTCCTAGTGGCTCTGTGGTTTCTACTGACACA-CAGATATTTAACAGACCATATT 6773 ||||| ||||||||| |||| || |||| ||| ||| ||||||||| || || | Sbjct 704 --CCACTCCCAGTGGCTCTATGGTATCCTCTGA-ACAGCAGTTATTTAACAAGCCTTACT 760 Query 6774 GGCTTCAGAGGGCCCAGGGCCATAACCATGGTGTATGCTGGGATAACACATTGTTTGTTA 6833 |||| | ||||||||||| |||||| |||| | ||||||| || | || | | Sbjct 761 GGCTGCGAAGGGCCCAGGGACATAACAATGGCATGTGCTGGGGCAATCGGGTCTTCCTGA 820 Query 6834 CAGTTGTGGATACTACTAGAGGTACTAACTTTAATATAACAGTAT-CCACATCCGAGGAC 6892 |||| ||||| || || | | || || | | | || | |||| | | || Sbjct 821 CAGTGGTGGACACCACGCGCAGCACAAATGTCTCTTT----GTGTGCCAC-TGTAAACAC 875 Query 6893 AAGAAGGAAACATATAATGCCTCTGATTACAAGCAATACCTCAGACATGTGGAAGAATAT 6952 | || || ||||| ||||| |||| ||| ||||||| || ||| |||| || ||| Sbjct 876 AGAAACTAA--TTATAAGGCCTCCAATTATAAGGAATACCTTAGGCATATGGAGGAGTAT 933 Query 6953 GATTTGCAATTCATGTTTCAACTTTGCAAAGTGCGTTTAACACCAGAGGTAATGGCGTAT 7012 |||||||| ||||| |||||||| |||||| | | || || ||| ||||||| || Sbjct 934 GATTTGCAGTTCATTTTTCAACTGTGCAAAATAACACTTACCCCCGAGATAATGGCATAC 993 Query 7013 TTGCATACTATGGA 7026 | |||| ||||| Sbjct 994 ATACATAACATGGA 1007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23388712009472