Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq13651 403 6e-108 seq26876 82.4 2e-11 >seq13651 Length=3921 Score = 403 bits (446), Expect = 6e-108 Identities = 445/588 (76%), Gaps = 11/588 (2%) Strand=Plus/Minus Query 48512 CCATACACCAGGCTGATACCTGCGAGCGAAGT-CAGTGAGTGGGTAAGCCGCCAAATCCT 48570 ||||||| | | ||| | ||||||| ||| || ||| |||||| ||| || ||||| | Sbjct 2092 CCATACATCGGCCTGGTTCCTGCGAACGAGGTACAG-GAGTGGATAAAGCGTCAAATTAT 2034 Query 48571 CAGCGATACCGGCAGCATCCATAACCCTGACCACGAACACCTGTTAGAGGCTGACCTCTG 48630 | ||| |||||||| | |||||||||||||| |||||| |||| || || || | Sbjct 2033 CGACGAAGCCGGCAGCCTGTTTAACCCTGACCACGGACACCTTGTAGACGCCGATCTACG 1974 Query 48631 CTTCATGTGGGC---GTCCGATTCGTTCGCTAAGAAAGGGCGGTATGTCCTCGGCCAAGC 48687 ||| |||||||| ||||| |||| | ||||||||||| |||| |||||||| || Sbjct 1973 CTTTATGTGGGCATCGTCCG---CGTTTGAGAAGAAAGGGCGCCATGTGCTCGGCCAGGC 1917 Query 48688 CGAGCAGGTAATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGAACAGCAGATGTA 48747 || ||||| | | || |||||||| |||||||| |||||||||||||||||||||| Sbjct 1916 TGAAGAGGTAGCGATGCGTGCCGGTGGCTGGCAGAAGGCCAGAATGGAACAGCAGATGTG 1857 Query 48748 TGAATGGTTCGGGCGCATCCCGAAGTTCATCATCACGCTGGCAGCCGATTACTGCTCACA 48807 ||| |||||||| | ||||| ||||||||||||||||| ||||| ||||||||||| Sbjct 1856 TGAGTGGTTCGGCGAGGTGCCGAAATTCATCATCACGCTGGCTGCCGACTACTGCTCACA 1797 Query 48808 ATGCAATGACCTCGAGTTCTGCGCACTGGTAGAGCATGAGCTTTACCACATCGCACAGGC 48867 || ||| ||||| ||||| ||| | ||||||||||||||||||||||| ||||| Sbjct 1796 GTGTTCTGATGCTGAGTTTTGCGCCCTGATCGAGCATGAGCTTTACCACATCGCGCAGGC 1737 Query 48868 CACCGATGATTTCGGAGCGCCTAAGTTCAACAAAGAGACCGGGCATCCATTGCTTACACT 48927 || || |||||||| || || || |||||||| || || || || |||| | || Sbjct 1736 AACAGACGATTTCGGCGCACCGAAATTCAACAAGGA---AGGCCAGCCGGTGCTGAAGCT 1680 Query 48928 GCGCGGCCACGACGTCGAAGAATTCATTGGTGTCGTACGTCGATACGGTGCCAGCAAAGA 48987 ||||||||||||||| ||||| || |||| || || || || || || |||||| || Sbjct 1679 GCGCGGCCACGACGTTGAAGAGTTTGTTGGCGTAGTTCGCCGGTATGGCGCCAGCGTGGA 1620 Query 48988 AGTACAGGAGCTTGTTGATGCGGCCAAAGCGCCAGCAGAAGTGGCTCACATCGATATAGC 49047 ||| ||||| || |||||||||||||| ||| || || ||||| || | | || || Sbjct 1619 AGTTCAGGAACTGGTTGATGCGGCCAACAGGCCCGCGGAGGTGGCACAACTAAACATTGC 1560 Query 49048 CAGGTCATGCGGCACATGCATGTTAAAACTGGCCTAACAATATGACTG 49095 ||| | ||||| | |||||| | | ||||| ||| || ||||| Sbjct 1559 CAGAGCGTGCGGTAACTGCATGCTGAGGCTGGCGTAAATATTGGACTG 1512 Score = 217 bits (240), Expect = 5e-52 Identities = 267/365 (73%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 1 ATGGCGACACTGAAAGGTGAGGTCAAAGCCTTCATCGTTCAGTCTCTTGCCTGTTTCGAT 60 ||||| || | ||| || || |||||||||||| ||||||| ||||| || || ||| Sbjct 1491 ATGGCTGCATTAAAACCAGATGTAAAAGCCTTCATCATTCAGTCGCTTGCGTGCTTTGAT 1432 Query 61 ACTCCATCCCAGGTGGTTGAGCTGGTCAAAAAAGAATTTGGCCTGAGCATCACACGTCAG 120 || || | ||| || ||| ||| ||||||| ||||| || | ||||| |||||| Sbjct 1431 ACCCCTACGTTGGTCGTGGAGTCCGTCCAAAAAGAGTTTGGGCTAAAAATCACGCGTCAG 1372 Query 121 CAGGTCGAATCCCACGACCCGACGAAAGCAAACGGCAGGGGCCTGGCGCAGAAATGGGTG 180 ||||| ||||| ||||||||||| || | | ||||| | ||||| |||| ||||| Sbjct 1371 CAGGTTGAATCTCACGACCCGACAAAGGTTAGCGGCAAGTCGCTGGCTAAGAAGTGGGTA 1312 Query 181 GACATGTTCAATGCCACCCGTAAACGATTCCAGAATGAGATCGCCGACATACCGATCGCG 240 ||| ||||| || | || || | |||||| ||| || || | || || |||||||| Sbjct 1311 GACCTGTTCCATACGACGCGGGAGCGATTCAAGACAGAAATTTCAGATATTCCGATCGCC 1252 Query 241 AACAAAGCGTACCGGTTACGCGTTCTCGACCGAATGGCGACCAATGCTGAAAAGATGAAG 300 ||||| || |||||| | |||||||| || || |||||||| | |||| |||||| Sbjct 1251 AACAAGGCCTACCGGCTGCGCGTTCTTGATCGCATGGCGACGCGAACCGAAACCATGAAG 1192 Query 301 AACTACGGCATGACCTCGCAACTTATCGAGCAGGCCGCCAAAGAAATGGGCGATGCCTAC 360 ||||||| || || | || | ||||||||||||| ||||| |||||||| || Sbjct 1191 AACTACGCATTGGCCGCTCAGATCGTCGAGCAGGCCGCGAAAGAGTGCGGCGATGCGTAT 1132 Query 361 ACTAA 365 || || Sbjct 1131 ACCAA 1127 >seq26876 Length=1038 Score = 82.4 bits (90), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 3/69 (4%) Strand=Plus/Minus Query 45831 CCATAACTGAGCCGTAGCC---ACTGGCTATCCTGAATTCATCAGTGATAGTTACGCTGC 45887 ||| ||||| ||||||||| ||||||||||||| |||| |||||||||||| ||||| Sbjct 700 CCAAAACTGTGCCGTAGCCCTAACTGGCTATCCTGCTTTCACCAGTGATAGTTATGCTGC 641 Query 45888 GGCCTTCTA 45896 ||||||||| Sbjct 640 GGCCTTCTA 632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156980961864944