Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq13651 583 2e-162 seq24649 244 3e-60 seq680 136 1e-27 >seq13651 Length=3921 Score = 583 bits (646), Expect = 2e-162 Identities = 733/996 (74%), Gaps = 10/996 (1%) Strand=Plus/Minus Query 17575 ATTCTGGCGGCTTAACCACCTGTACTGGATCACCGACAAACGCGGGAAGCCGGTACGTTT 17634 ||||||||| || ||| |||| |||| || ||||||||| |||||| ||| || Sbjct 991 ATTCTGGCGCCTGAACAACCTTTACTTCATTACCGACAAATCGGGGAAGAAGGTTAAGTT 932 Query 17635 CAAAATGACCCCGGAGCAGTTGGCCTACTTCGAGGGGATGCATACACGAAACATCATCCT 17694 || |||||||| |||||| | | |||||||| || | || || | ||||| ||||| Sbjct 931 CAGGATGACCCCTGAGCAGCTCGAATACTTCGAAGGCGTACACACCAGGAACATAATCCT 872 Query 17695 GAAAGCGCGCCAGCTCGGTTTTACAACGCTGGTGTGCATCATTCAGCTCGATGCCGCGCT 17754 || || | |||||||| ||||| ||||| | || || | || |||||||||||| | Sbjct 871 AAAGGCCAGACAGCTCGGCTTTACGACGCTAGCTTGTATTGTCCAACTCGATGCCGCGTT 812 Query 17755 CTTTGAGGGCGCAAAGTGCGCGCTTATCGCTCACACCCTCAATGACGCAAAGCGCCTTTT 17814 || || || || |||||||| || || |||||| | || |||||||||||| | || Sbjct 811 GTTCGAATCAGCCAAATGCGCGCTGATTGCCCACACCTTAAACGACGCAAAGCGCTTGTT 752 Query 17815 CCGGGAGAAAATCAAATATGCCTATGATCGACTGCCTGCTGAGATCCGGGCGGCTAATCC 17874 |||| || ||||||||||||| || ||||| || |||| | ||| || || Sbjct 751 TAGGGAAAAGGTCAAATATGCCTACGACAACCTGCCGGCGCTGATCAGAAAGGCGAACCC 692 Query 17875 TGCGTCTAATGATGCCGCTGGCGAGCTGGTTTTTAAGAAGGGCGGCTCGCTCTATGTTTC 17934 || || || || | ||| ||||| |||||||| || |||||||| ||||| || Sbjct 691 GGCAAAGAACGACGCAGTTGGTGAGCTTGTTTTTAATAATGGCGGCTCTCTCTACGTCAG 632 Query 17935 GACATCGTTTCGTGGCGGCACGCTGCGCTATCTTCATGTGTCCGAGTTCGGGAAGATCTG 17994 || || |||||||||||||||||||| || || || || || |||||||| |||||||| Sbjct 631 CACGTCATTTCGTGGCGGCACGCTGCGTTACCTGCACGTTTCTGAGTTCGGCAAGATCTG 572 Query 17995 CGCAAAGTACCCGGACAAGGCGCGCGAAATTGTCACTGGTGCTTTTGAAGCTGTTTCAAC 18054 ||| ||||||||||||||||| || ||||| |||||||| || ||||| || || || || Sbjct 571 CGCTAAGTACCCGGACAAGGCCCGTGAAATCGTCACTGGCGCCTTTGAGGCAGTATCGAC 512 Query 18055 TGACTGTTTCACGACGATTGAAAGCACAGCAGAAGGCCGCGCGGGCTATTTCTTCGATTA 18114 || || || || || || || || ||||| || |||||||| || ||||||||||| || Sbjct 511 AGATTGCTTTACAACTATCGAGAGTACAGCCGAGGGCCGCGCTGGGTATTTCTTCGACTA 452 Query 18115 TTGCCAGACTGCGGAAAAAGCGGCGCTATCTGGTGCGCCCCTCTCTCAA--CTGAGCTGG 18172 ||||||||| || || ||||| ||| | || || | | |||| || |||| Sbjct 451 TTGCCAGACGGCCGAGAAAGCACAGCT-GCAGG-GCAAAACGTTATCAAACCTCGACTGG 394 Query 18173 AAATTCTTCTTTTTCAGCTGGTGGATGAACCCCCAGTATGCAATCGACCCCGTAGAGCCG 18232 || || ||||| |||| ||||||| |||||| ||||||||||| ||||| ||||| Sbjct 393 AAGTTTTTCTTCTTCACGTGGTGGAAGAACCCTCAGTATGCAATAGACCCGGTAGAAAGC 334 Query 18233 CTATCACAGCGCCTGCGCGATTATTTCGATGAGCTGGAGGCAAAGCACCGCCTTACGCTC 18292 || || |||| || || || ||| | |||||||| || || || || | |||||| Sbjct 333 CTCCCAGAGCGTCTTGTTGACTACTTCAACGAGCTGGAAGCCAAACATGGCGTCACGCTC 274 Query 18293 AACGACCGCCAGAAAGCGTGGTATCAGGCCAAAGAAACCACCCTCGGCGACGACATGAAA 18352 || || |||||||| || ||||||| || ||||| | || || |||||||||||||| Sbjct 273 AATGAACGCCAGAAGGCCTGGTATCTCGCTAAAGAGAAGACTCTTGGCGACGACATGAAG 214 Query 18353 CGGGAATACCCGTCTATCCCCGCCGAGGCGTTCCAGCAGTCCGTTGAAGGCGCTTACTAC 18412 || || || ||| ||| ||||| || || ||||| ||||| || || || || || ||| Sbjct 213 CGTGAGTATCCGAGTATACCCGCTGAAGCCTTCCAACAGTCGGTAGAGGGAGCGTATTAC 154 Query 18413 GCGAAACAGTT-CGC-GTTTCTCTACGCACAGCGCCGCATCGG-CCAGTTGCCGGATAAC 18469 || || || || ||| | | | ||| ||| || ||||| || || || || ||| Sbjct 153 GCCAAGCAATTCCGCTGGCTGTATACCAACA--AGCGGATCGGTTCACTT-CCCGACAAC 97 Query 18470 GATCACCTTCCTGTTTACACGTTCTGGGATATCGGCGTCGGTGACTCAACGGCTATCTGG 18529 |||||| || ||| ||||||| ||||||||||| || ||||||||||| || |||||| Sbjct 96 TCTCACCTCCCGGTTCACACGTTTTGGGATATCGGTGTAGGTGACTCAACAGCAATCTGG 37 Query 18530 TTTGTGCGCGTGGTGGGGAACGAGTTCCACATCATC 18565 || || || | ||| || | ||| | || ||||| Sbjct 36 TTCGTTCGTGAGGTTGGTGAAGAGGTTCATGTCATC 1 >seq24649 Length=1272 Score = 244 bits (270), Expect = 3e-60 Identities = 316/435 (73%), Gaps = 1/435 (0%) Strand=Plus/Minus Query 18543 TGGGGAACGAGTTCCACATCATCGACTACTACGAGAACAGCGGCGAAGGGCTTCGCCATT 18602 ||| ||| ||||| || |||||||||||||||||||| ||||| ||| | | || | Sbjct 1272 TGGTGAA-GAGTTTCATGTCATCGACTACTACGAGAACTCTGGCGAGGGGTTGAGGCACT 1214 Query 18603 ACATGAAGATCCTTAAAGAAAAGGGATACACCTACGCCGAACACTGGGCGCCCCACGATA 18662 |||||||| | | ||||| || || |||| ||| ||||||| ||| ||||||| Sbjct 1213 ACATGAAGGTGTTAAAAGACCGTGGCTATGAGTACGGCGAGCACTGGGGGCCACACGATA 1154 Query 18663 TAGACAACCGCGAGTTTGCGAACGACGGCAAATCCCGCCGCCAGCTTGCGCGTGAGGGTT 18722 | || ||||| ||||||| || | ||||| || |||| ||||| ||||||| Sbjct 1153 TTGAAAACCGAGAGTTTGGCTCTGATGCTAAATCACGGAAGGAGCTGGCGCGCGAGGGTT 1094 Query 18723 ATGAGGTGGACGGCGAAATCTATTCGATCTCGTTCAGTGTGGTGCCGAAGCTCGGTGTTG 18782 | || | |||||| | | |||||||| | |||| || || || || | || |||| Sbjct 1093 ACGAAATCGACGGCCAGGTGTATTCGATGACTTTCAAGGTTGTCCCCAAAGTGGGCGTTG 1034 Query 18783 CTGAGGGGATCGAGCTGGTGCGCGAAATCCTGCCCCGCTGCGCTTTTGACAGCGTGAAAT 18842 | || |||||| || || |||||||| || |||| |||||| | ||||| Sbjct 1033 ATACCGGTATCGAGTCTGTCCGTGAAATCCTCCCTAAATGCGTATTTGACGATGAGAAAT 974 Query 18843 GCGAGGAAGGGATAAGCCACCTGGAAGCCTACCGCAAGGAGTGGGATGCCAAGCGCGGCT 18902 | | || |||||| ||||| || | ||||| || |||||||||| ||||||||| | Sbjct 973 GTGCTGAGGGGATATCTCACCTTGAGGGATACCGAAAAGAGTGGGATGACAAGCGCGGGT 914 Query 18903 GCTGGAAAGACAACCCTTTGCACGACTACACCTCGCACGCTTCGGACGGTTTCCGCTACT 18962 |||||||||||| ||| | ||||| |||| ||||||| ||| || ||||||||||||| Sbjct 913 GCTGGAAAGACAGACCTCTTCACGATCACACTTCGCACGGTTCAGATGGTTTCCGCTACT 854 Query 18963 TCGCTGTAGCGATGA 18977 | || ||||||| || Sbjct 853 TTGCCGTAGCGAAGA 839 >seq680 Length=42727 Score = 136 bits (150), Expect = 1e-27 Identities = 390/597 (65%), Gaps = 16/597 (3%) Strand=Plus/Plus Query 19771 CCGGATGTTCCGCCGCTGGCGGATATCGCCTCGATGAACATCAAGCACTACCAGGCCGAA 19830 || ||| | || || ||||| || |||| |||| || | ||||| ||| |||||| Sbjct 35391 CCAGATTTGCCACCACTGGCCGACCTCGCGCATCTGAATATTATGCACTTCCAAGCCGAA 35450 Query 19831 GCGGATATCGCCGAGATTGCCCACCTGTGCGGGAATCCGACCCCTACCGTTTCCGGGCTT 19890 ||||| |||||||||||||| ||||| ||| |||||| | | | | ||||| | Sbjct 35451 GCGGACATCGCCGAGATTGCACACCTCGTCGGCAATCCGTCGCTGGTCATCTCCGGCATG 35510 Query 19891 ACAGAACCCTGGGCAGATAAATA---CCTGAAAGAAGGGATTCGCATCGGCTCAACAACC 19947 ||| | ||| || | | | || ||| | | ||| |||||| || | Sbjct 35511 ACAACGCAATGGTCAAAGCAGTTTTTCCCGAATG---GCATTTTCATCGGGTCTTCGGAA 35567 Query 19948 GGCGTGCTTCTGCCTGCTGGCGGGAAACTCGATATCGTCCAGGCCGAAGATCGCAACCTG 20007 || ||| ||||| | | | | ||| ||| | ||||||||||| |||||| || Sbjct 35568 GGTCTGCAACTGCCCCCGAACTGTACCGCCGACATCATTCAGGCCGAAGACCGCAACATG 35627 Query 20008 CCGATTGTCGTCGCCGAACGTCGCGAGAAACAGATGGCGATGCTCGGCGCGAAGCTGGTG 20067 ||| | || | ||||||||||||||||| || ||||||| ||||| || |||||||| Sbjct 35628 CCGTTAGTGCTGGCCGAACGTCGCGAGAACCAAATGGCGAAACTCGGTGCAAAGCTGGTC 35687 Query 20068 GAGCGCGGCACCGCAGCCAGGACAGCCACGCAGGCCGCCGATGAGGCGCAGACCGATAAC 20127 || || || || | | || || || ||||| || || |||| ||||||||| Sbjct 35688 GAACGTGGGGGCGGCGTTCGCACGGCGACACAGGCGCAGGACGAATCGCAAACCGATAAC 35747 Query 20128 TCTATCCTGTCTCTCTGCGTAGGGAACGTGGAAGCCGCCATAAATCGCGCTCTCGTGTTC 20187 || | ||||| || || | | ||||| |||| | ||| || | || | | | || Sbjct 35748 TCCGTGCTGTCACTGTGTGCGGCCAACGTCGAAGACTGCATCAACCAAGCGTTAGAGATC 35807 Query 20188 GCTGCGGCGTTTGCA-----GGG---GGTAGCGGTACGATTGCCATCAATAAGCGCTATG 20239 || || | | || ||| |||| |||| || |||| ||| || | Sbjct 35808 GCGGC--ACTATACACCGGCGGGAAAGGTAAGGGTAAAATAACCATACCGAAGAAATACG 35865 Query 20240 AAGTCGCACAGCTTGATTCACAGGCTATAACGGCGCTGCTGGCTGCGGTGCAGTCCGGGA 20299 | |||| || |||||||| ||||| || || ||| ||||| | | || || || | Sbjct 35866 ACATCGCGCAACTTGATTCGCAGGCGATCACCGCGTTGCTGTCGGGTGTACAACAGGGTA 35925 Query 20300 AAATGCTGCTGGTGGATTTCATCCGTTACATGCAGTCAATTGGCCTGGTCGATCCGA 20356 || || | | ||| ||||| || |||| |||| ||| ||| | | ||||||| Sbjct 35926 CTATCTTGTTAGAGGACTTCATTCGGTACACGCAGAAAATCGGCGTTGCAGATCCGA 35982 Score = 104 bits (114), Expect = 6e-18 Identities = 243/357 (68%), Gaps = 16/357 (4%) Strand=Plus/Plus Query 22762 AAAGGCGCGCGCCC-GATGGGTGATGCGTTCT-CGCGTCTGGTGGCGTGGGTGATGGATG 22819 ||| ||| ||| || | | ||||| || ||| | ||| || |||||| | ||||| | Sbjct 38462 AAAAGCGTGCGGCCTGTTCGGTGACGCATTCGGCTCGT-TGAAAGCGTGGATCATGGACG 38520 Query 22820 GCGCGACCTACAACGATTT---CATCGACGAGTCGCTGACCAACGCCAGCCGCCTGTTCC 22876 | ||||||||||||| || || ||| |||| ||||| | ||||||| Sbjct 38521 GTATCGCCTACAACGATTTGGTCACCGGCGACATCCTGAAAAACGCTTCGCAGCTGTTCC 38580 Query 22877 AGATCGGCAACGTGAACATCATGCAGGACGGGCTGGGCCGCCGCTTCGTTATCTCTGATA 22936 ||||||||||||| | ||||||||| ||||| | |||||||||||||||||| | ||| Sbjct 38581 AGATCGGCAACGTCACCATCATGCAAGACGGCTTCGGCCGCCGCTTCGTTATCACCGATG 38640 Query 22937 TCCCGGCGCTG------GCAGACGGCGACCTTCAGCACGTTCTCG-GCCTGACCGCTGGC 22989 |||| ||| || ||| ||| | || | | | | ||||| |||| || Sbjct 38641 CGCCGGGCCTGCGTGATGC-GACTGCGGGCACCACTAATCTGTTGTGCCTGTCCGCCGGT 38699 Query 22990 GCTGCTGCGGTGCAGACTTCCTCGCTTAACATG-CTGGCGCAGCCGGTACTGGGCAAAGA 23048 || || || || ||| | ||| | | ||| | ||| |||| |||||| |||| Sbjct 38700 GCCGCCGCTGTTCAGGCGTCCGGTTTGCAGATGTACGACGC-GCCGAAGCTGGGCGAAGA 38758 Query 23049 AAACCTGAAAGCGCTGATGCAGGGCGAATACGACTACACCATCGGCCTCAAGGGTTA 23105 |||| || ||| |||| || |||||||||| | ||||||| | ||||| || Sbjct 38759 AAACGTGTCCTACCTGCTGCAAGGTGAATACGACTTCGTCATCGGCTTGAAGGGCTA 38815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127739347427328