Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_018846.1 Length=60894 Score E Sequences producing significant alignments: (Bits) Value seq9276 246 1e-60 seq13651 136 2e-27 seq35391 93.3 2e-14 >seq9276 Length=6644 Score = 246 bits (272), Expect = 1e-60 Identities = 426/617 (69%), Gaps = 14/617 (2%) Strand=Plus/Plus Query 10752 TATCCAGGCGATCGCGACGGGGCCAGTATTTGCTGGCGCGCTTAACAATGGCTTTTCTGG 10811 |||||||||| ||| || |||||||||||||| || ||||| || || | || | | Sbjct 5161 TATCCAGGCGCTCGGCGCGCGGCCAGTATTTGCTTGCCCGCTTGACGATTGTCTTACGCG 5220 Query 10812 CCATTTCATCGGGGAAACTATCCCACGGGCTACTTCCTCCGTTATTTCCGGCTTTGCTGC 10871 ||||||| | ||| | | |||||||| |||| ||| || || ||| Sbjct 5221 CCATTTCCGCCCAGAACGTCTTCCACGGGC---------CGTTCTTT---GCCTTACTGG 5268 Query 10872 ACGCCCTGATGACCTCGATTTCCCTGTTGCTCATCTCTTCGGTCAGATAGTCGCCTTCGG 10931 || | | ||| || || | |||||| || || || ||||| || || |||| Sbjct 5269 TAGCTTCGGTTGCCTTTATCTCTGCGAGGCTCATTTCCTCTGTTAGATAATCTCCGTCGG 5328 Query 10932 ATGTTTTTACGACACAATAACCGCCAA-TGCGTGCGCCCCTGTCTACGAAGGGGTTGTAT 10990 || || || || || ||||| | | | | | || | || |||| | |||||| Sbjct 5329 GAGTCTTAACAGTGCAGTAGCCGCCGACTACAT-CACCGCGATCGCCGAAAGCGTTGTAC 5387 Query 10991 TTGTGCGTGGGGGCGCAGTCAATACCGTTGGACTCGTAAATGTCCTTCTCGTAAACAAGT 11050 || || || || |||| || | || || || ||||| | || ||| |||||| || Sbjct 5388 TTATGAGTAGGCGCGCTATCCAGTCCATTCGATTCGTAGGTATCGTTCGAGTAAACCAGC 5447 Query 11051 TTGCATTGCCCCCACTGAATGGCTCCTGTGACCTGTGCCAGATGCAGAAGCCCCATATAA 11110 ||||| || ||||||| ||| | || || |||| || ||||| |||||||||||||| Sbjct 5448 TTGCACTGTCCCCACTTAATCGACCCGGTAGCCTGAGCGAGATGAAGAAGCCCCATATAG 5507 Query 11111 CTGATATCCAGGCATACAGCCTTTTTTCGTGGGACCAGATACGCCAGCTTGCTGGCCGGG 11170 ||||| || ||||| || | | ||| || || || || |||||||| ||||| ||| Sbjct 5508 CTGATGTCGAGGCACACCATCCCATCTCGCGGAACGAGGTATGCCAGCTTACTGGCTGGG 5567 Query 11171 TTCAGGGTTATGCCGATGGCGGCAACATTGATGATAGCGTTCTGTGCGCTGGGCAGATTT 11230 ||||| |||||||| || || ||||| ||||| || |||||||| ||||| | | |||| Sbjct 5568 TTCAGCGTTATGCCAATTGCCGCAACGTTGATAATCGCGTTCTGCGCGCTTGCCGGATTC 5627 Query 11231 GCCCTTGCTGTGTCAGCCAGAAAGGCATTTTTCTGGAATTGCTGAATTGCAAACTGACTT 11290 | | || || | | ||| || |||| |||||||| | || || || ||||| ||| Sbjct 5628 CCGATCGCCGTTTTCGTCAGGAAATCATTCTTCTGGAAAAGTTGCATCGCGAACTGGCTT 5687 Query 11291 TCCTTCGCCCATGTCAGCGTCGGTTCAGTTAATGCCTCGCAGAAAAAGCGCTCCTGCTGC 11350 |||||||||||||| | | | ||||| | || ||| || || | |||||||| Sbjct 5688 TCCTTCGCCCATGTAACTGATTGGTCAGTCAGCGCGCCGCTAAATAACGGTTCCTGCTGT 5747 Query 11351 TTAACAAATTCAACGAT 11367 || || ||||||| ||| Sbjct 5748 TTCACGAATTCAATGAT 5764 >seq13651 Length=3921 Score = 136 bits (150), Expect = 2e-27 Identities = 177/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 28785 CTGACCGAACCTCAGAAAGCGGGGATCGCGTCATTCTGTCCTTACAACATTGGCCCCGGT 28844 |||||||||||||| |||| || ||||| ||||||||||| | ||||| ||||| || Sbjct 3258 CTGACCGAACCTCAAAAAGTTGGTATCGCCTCATTCTGTCCGTGGAACATCGGCCCTGGA 3199 Query 28845 AAGTGTTTCCCGTCGACGTTTTATAAACGAA--TTAATGCAGGCGATCGCAGGGGAGCGT 28902 || || ||| | || || ||||| || ||| | || || ||||| |||| || || | Sbjct 3198 AAATGCTTCACCTCCACCTTTTACAA--GAAGCTGAACGCCGGCGACCGCATTGGTGCCT 3141 Query 28903 GTGAAGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATCCGCTCAAATA 28962 | || || ||| | ||||| | |||| |||| |||| ||||| |||||||| |||| Sbjct 3140 GCCGAGAAATCCGCCGCTGGATATACGACGCTGGCCGAGATTGCCGCATCCGCTCGAATA 3081 Query 28963 ATTGCTACGGTCAGGTATCCCGTCGCGACCAGGAGAGTGCGCTGGCATGCTGGGGTATCG 29022 | |||||||| ||| | || ||||| ||||| | || || |||||||| | | Sbjct 3080 ACTGCTACGGGCAGATCGTACGGCGCGATCAGGAAGCCGAACTAGCTTGCTGGGGATTGG 3021 Query 29023 ACA 29025 ||| Sbjct 3020 ACA 3018 >seq35391 Length=557 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 23592 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 23651 ||||| ||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| Sbjct 191 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGTTGGTTCAAAC 132 Query 23652 CCAGCAAGGGCCACCATAT 23670 ||| || ||||||||| || Sbjct 131 CCAACAGGGGCCACCAAAT 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194654089719488