Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1817 105 2e-17 >seq1817 Length=26970 Score = 105 bits (116), Expect = 2e-17 Identities = 269/403 (67%), Gaps = 16/403 (4%) Strand=Plus/Plus Query 150377 aaaaccaaaaaGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTT 150436 ||||| || || ||| | ||| ||||| |||||||||||||| || || || Sbjct 1538 AAAACAAAGAATAATCCAGTTTTAATTGGTCTGCCAGGTGTTGGTAAGACGGCCATTATT 1597 Query 150437 GACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAA 150496 || || ||||||||| | || | | |||||||||||| | | | |||||| || Sbjct 1598 GAAGGTTTAGCACAAAGAATTGTTCGTGGTGATGTTCCTAGTAATTTAAAAGATA---AA 1654 Query 150497 ATTCTTTCT---TTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTC 150553 ||| ||| | || ||||||||||||| | ||||||| |||| | || || ||||| Sbjct 1655 ATTATTTATGAGTTAGATATGGGTGCATTAATTGCTGGTGCTAAATTTCAAGGAGAATTT 1714 Query 150554 GAAGAACGTGTAGACAATTTGCTA-CAAGAA-CTAAAAGAACGCGATG---ATGTTATTC 150608 ||||||||| | | || || || || || | ||| | | ||| | ||||| Sbjct 1715 GAAGAACGTTT--AAAAGCTGTTATTAATAAGGTTAAAAATTCCAATGGCAAGATTATTA 1772 Query 150609 TGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGCGGCGGTTCTTTGG 150668 |||| || ||||| | ||| ||| | ||||| || ||| || || ||| Sbjct 1773 TGTTTATTGATGAGTTACATTTAATTGTTGGTGCAGGAAGAACT---CAAGGGTCAATGG 1829 Query 150669 ATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCGTGTCATCGGTGCAA 150728 || ||| | ||||| || | |||| |||||| | ||| || || |||| Sbjct 1830 ATGCTTCTAATTTATTAAAGCCAATGTTGGCTCGAGGTGAATTGCGTTGTATTGGAGCAA 1889 Query 150729 CAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771 |||| | ||||| |||||| || | |||||||||||||| || Sbjct 1890 CAACTTTAGATGAGTATCGTCAATATATTGAAAAAGATGCTGC 1932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147049252312392