Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_019419.2 Length=43457 Score E Sequences producing significant alignments: (Bits) Value seq680 197 4e-46 >seq680 Length=42727 Score = 197 bits (218), Expect = 4e-46 Identities = 467/701 (67%), Gaps = 36/701 (5%) Strand=Plus/Minus Query 605 GTTCTCCTCGCGGTTGAACATCTTGTACACCGCGCCCGACGTAAGGTTAACAAACAGGCC 664 |||| || ||||| |||| | | ||| | |||| ||| | ||| || ||| ||| Sbjct 34030 GTTCAGCTTGCGGTCGAACGTATGGTAAATGATACCCGCCGTCATGTTGACGAACTCGCC 33971 Query 665 GTTCAGGTACGCATCGATCAGGTTAGTCGGGTACTGACTGCGCAGCGTGTCGATAAAGTC 724 ||| |||||||| || | || | ||| ||| || | ||||| | |||| |||| Sbjct 33970 GTTTAGGTACGCCTCTACCAACTCTTTCGAGTATTGTTTTTCGAGCGTCTTGATATAGTC 33911 Query 725 TGCCGGTAAATGGTGGTTGTCCGTGGTCTTCGCCCGGATCAGGCGCTTCTGGCTACCCTT 784 | |||| | ||| ||||||| |||||||| ||| || |||||| || Sbjct 33910 TTCCGGCAGATGCGGGTTGTCGCGCGTCTTCGCTTTGATAAGCCGCTTCATCTCGTCCAA 33851 Query 785 CTCCACCTCGAAAATTTGATACATCGCCCGGTAGCCTTCCGGCGTGGACACGATGACAAA 844 ||| |||| || | |||||||| ||| | ||||| || |||||||| || | | Sbjct 33850 CTCAGTGACGAAGATGCGGTACATCGCGCGGAAACCTTCAGGTGTGGACACAATAATCAT 33791 Query 845 CTGGCGGACGAAGCCCGCG-CGCAGACGACCGAGCAATTTGTGGTATGCCGCCAT---TG 900 |||||| || || ||| ||||||||||| |||| ||| | | |||||| || Sbjct 33790 CTGGCGCACTTTACC-GCGACGCAGACGACCCAGCAGTTTCACGAA---CGCCATATATG 33735 Query 901 CGACGTCTTGTTTCGTGGTGTCGAACTCGTCGGCAACAATCCACGCGGCGTTGACCCCGA 960 ||||||| | || ||||||||||||||| ||| |||||||||||| || |||| Sbjct 33734 CGACGTCCTCCGCCGAGGTGTCGAACTCGTCCATCACACACCACGCGGCGTTAACACCGA 33675 Query 961 TCAGGCGGGTATAGTTCTCCATTGATTCACAGATAACGCGAGT---CCATTTGC------ 1011 | ||| ||||||| ||||| ||| ||||||| | || || | |||| Sbjct 33674 CTAAGCGTTTATAGTTTTCCATCGATGCACAGATGATACGTGTGCGGCGGTTGCGCTGGA 33615 Query 1012 CTTTC----------ACCAGCACGTTATAGATCTTGTCCTGCTTATTGAACTTCCACCGG 1061 |||| |||||||| || | ||||| ||| ||| || ||||| | || Sbjct 33614 TTTTCTCATCCCAAACCCAGCACG-TAAAAATCTTCTCCACCTTGTTAAACTTGTATCGA 33556 Query 1062 AATCCGGCCTCGTCGAATGCCTTCTCCAGTTCCGGATACATGA----TTTTAACCAGGAG 1117 | ||| ||| || | ||| | || ||||| ||||| | | ||||| || Sbjct 33555 ATGCCGTACTCATCAAGCGCCGTTTCAAGTTCGGGATAAAGCACCTGCGTTAAC----AG 33500 Query 1118 TGGAATAGTCGGTTCGGTCACGATGCCGTCATAACCAGGGTTAAGTGTCAGAAGCTGGAT 1177 ||| ||||||||||| | || ||||| | || || || | ||| |||||||| Sbjct 33499 TGGGTGCGTCGGTTCGGTAATCATACCGTCGCACCCCGGATTCAAAATCATCAGCTGGAT 33440 Query 1178 GACCTTACGCGCAGCTACCCACGACTTGCCACCACCGAAGCCGGAACACAGGCCGAGGAT 1237 | |||||| | || ||||| | || || || || |||| || ||||||||||| || Sbjct 33439 CGCTTTACGCACCGCGACCCAAGTTTTACCGCCGCCATAGCCCGAGCACAGGCCGAGAAT 33380 Query 1238 TTTAGTCTTCGTGTCGCGCAGTAGTTCAACCTGGTGCGGCA 1278 ||| ||| | |||| |||||| || | ||||||||||| Sbjct 33379 TTTCGTCGTGATGTCTTCCAGTAGGTCGAACTGGTGCGGCA 33339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138880076270712