Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq9276 246 1e-60 seq13651 154 6e-33 seq35391 93.3 2e-14 >seq9276 Length=6644 Score = 246 bits (272), Expect = 1e-60 Identities = 426/617 (69%), Gaps = 14/617 (2%) Strand=Plus/Plus Query 11253 TATCCAGGCGATCGCGACGGGGCCAGTATTTGCTGGCGCGCTTAACAATGGCTTTTCTGG 11312 |||||||||| ||| || |||||||||||||| || ||||| || || | || | | Sbjct 5161 TATCCAGGCGCTCGGCGCGCGGCCAGTATTTGCTTGCCCGCTTGACGATTGTCTTACGCG 5220 Query 11313 CCATTTCATCGGGGAAACTATCCCACGGGCTACTTCCTCCGTTATTTCCGGCTTTGCTGC 11372 ||||||| | ||| | | |||||||| |||| ||| || || ||| Sbjct 5221 CCATTTCCGCCCAGAACGTCTTCCACGGGC---------CGTTCTTT---GCCTTACTGG 5268 Query 11373 ACGCCCTGATGACCTCGATTTCCCTGTTGCTCATCTCTTCGGTCAGATAGTCGCCTTCGG 11432 || | | ||| || || | |||||| || || || ||||| || || |||| Sbjct 5269 TAGCTTCGGTTGCCTTTATCTCTGCGAGGCTCATTTCCTCTGTTAGATAATCTCCGTCGG 5328 Query 11433 ATGTTTTTACGACACAATAACCGCCAA-TGCGTGCGCCCCTGTCTACGAAGGGGTTGTAT 11491 || || || || || ||||| | | | | | || | || |||| | |||||| Sbjct 5329 GAGTCTTAACAGTGCAGTAGCCGCCGACTACAT-CACCGCGATCGCCGAAAGCGTTGTAC 5387 Query 11492 TTGTGCGTGGGGGCGCAGTCAATACCGTTGGACTCGTAAATGTCCTTCTCGTAAACAAGT 11551 || || || || |||| || | || || || ||||| | || ||| |||||| || Sbjct 5388 TTATGAGTAGGCGCGCTATCCAGTCCATTCGATTCGTAGGTATCGTTCGAGTAAACCAGC 5447 Query 11552 TTGCATTGCCCCCACTGAATGGCTCCTGTGACCTGTGCCAGATGCAGAAGCCCCATATAA 11611 ||||| || ||||||| ||| | || || |||| || ||||| |||||||||||||| Sbjct 5448 TTGCACTGTCCCCACTTAATCGACCCGGTAGCCTGAGCGAGATGAAGAAGCCCCATATAG 5507 Query 11612 CTGATATCCAGGCATACAGCCTTTTTTCGTGGGACCAGATACGCCAGCTTGCTGGCCGGG 11671 ||||| || ||||| || | | ||| || || || || |||||||| ||||| ||| Sbjct 5508 CTGATGTCGAGGCACACCATCCCATCTCGCGGAACGAGGTATGCCAGCTTACTGGCTGGG 5567 Query 11672 TTCAGGGTTATGCCGATGGCGGCAACATTGATGATAGCGTTCTGTGCGCTGGGCAGATTT 11731 ||||| |||||||| || || ||||| ||||| || |||||||| ||||| | | |||| Sbjct 5568 TTCAGCGTTATGCCAATTGCCGCAACGTTGATAATCGCGTTCTGCGCGCTTGCCGGATTC 5627 Query 11732 GCCCTTGCTGTGTCAGCCAGAAAGGCATTTTTCTGGAATTGCTGAATTGCAAACTGACTT 11791 | | || || | | ||| || |||| |||||||| | || || || ||||| ||| Sbjct 5628 CCGATCGCCGTTTTCGTCAGGAAATCATTCTTCTGGAAAAGTTGCATCGCGAACTGGCTT 5687 Query 11792 TCCTTCGCCCATGTCAGCGTCGGTTCAGTTAATGCCTCGCAGAAAAAGCGCTCCTGCTGC 11851 |||||||||||||| | | | ||||| | || ||| || || | |||||||| Sbjct 5688 TCCTTCGCCCATGTAACTGATTGGTCAGTCAGCGCGCCGCTAAATAACGGTTCCTGCTGT 5747 Query 11852 TTAACAAATTCAACGAT 11868 || || ||||||| ||| Sbjct 5748 TTCACGAATTCAATGAT 5764 >seq13651 Length=3921 Score = 154 bits (170), Expect = 6e-33 Identities = 336/500 (67%), Gaps = 5/500 (1%) Strand=Plus/Minus Query 29063 CTGGCGCTGATTGCCGCAGGTGCTTCTGCGCCTGAAATCCTCGACCAGTTTCTGGATGAA 29122 ||||| ||||| || || || || || || |||| || | ||||||| ||| || Sbjct 3507 CTGGCCCTGATCGCGGCCGGCGCATCGGCTCCTGTCATGATGTCGCAGTTTCAGGAAGAG 3448 Query 29123 AAGGAAGGCAACCACACCACGGCATACCGTGATGGTGCGGGTATCTGGACCATCTGCCGT 29182 || ||||| | | | || ||||||| || |||| || |||||||| || ||| | Sbjct 3447 AAAGAAGGTCAGCGCCTGACCGCATACCAGGACGGTGTTGGAATCTGGACAATTTGCGGC 3388 Query 29183 GGAGCCACCCGGGTGGATGGTAAGCCTGTTATTCCTGGCATGAAGCTGTCGAAGGGGAAA 29242 || | || ||| | || || ||| | || | ||| | | | | Sbjct 3387 GGCGTGACGATGGTCAACGGCCAGAAGGTTGTGAAGGGGCAGCGCCTGACCGCCGAGCAG 3328 Query 29243 TGCGACCAGGTTAACGCCATTGAGCGTGATAAGGCGCTGGCATGGGTGGAGAAAAACATC 29302 ||| | ||| || |||| |||| | ||||| || | ||||| || ||| || Sbjct 3327 TGCAAGCAGATTGACGCAGCAGAGCAGAAAAAGGCTCTCGACTGGGTAGACCGCAACGTC 3268 Query 29303 AAAGTGCCACTGACTGAACCCCAGAAAGCGGGTATTGCGTCATTCTGTCCTTACAACATT 29362 || || | ||||| ||||| || |||| ||||| || ||||||||||| | ||||| Sbjct 3267 AAGGTAACGCTGACCGAACCTCAAAAAGTTGGTATCGCCTCATTCTGTCCGTGGAACATC 3208 Query 29363 GGCCCAGGTAAGTGTTTCCCGTCGACGTTTTATAAACGAA--TTAATGCAGGAGATCGAA 29420 ||||| || || || ||| | || || ||||| || ||| | || || || || || | Sbjct 3207 GGCCCTGGAAAATGCTTCACCTCCACCTTTTACAA--GAAGCTGAACGCCGGCGACCGCA 3150 Query 29421 AAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATTC 29480 ||||||||| || || ||| | ||||| | |||| |||| |||| ||||| || | Sbjct 3149 TTGGTGCCTGCCGAGAAATCCGCCGCTGGATATACGACGCTGGCCGAGATTGCCGCATCC 3090 Query 29481 GCTCAAATAACTGTTATGGTCAGGTCTCACGGCGTGACCAGGAGAGCGCGCTGGCGTGCT 29540 |||| |||||||| || || ||| || |||||| || ||||| || || || |||| Sbjct 3089 GCTCGAATAACTGCTACGGGCAGATCGTACGGCGCGATCAGGAAGCCGAACTAGCTTGCT 3030 Query 29541 GGGGAATTGACAGAT-AAGC 29559 ||||| | |||| || |||| Sbjct 3029 GGGGATTGGACAAATGAAGC 3010 >seq35391 Length=557 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 24095 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 24154 ||||| ||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| Sbjct 191 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGTTGGTTCAAAC 132 Query 24155 CCAGCAAGGGCCACCATAT 24173 ||| || ||||||||| || Sbjct 131 CCAACAGGGGCCACCAAAT 113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193467408582280