Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_019501.1 Length=39646 Score E Sequences producing significant alignments: (Bits) Value seq36678 107 5e-19 seq26876 100 7e-17 seq22233 96.9 9e-16 >seq36678 Length=505 Score = 107 bits (118), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 8962 ATCGCAAATTTCGCGATGGAAAGACAGCTTTATCCCAAAGATGGCCATGCTTCTGGCTGT 9021 ||| ||||| | || |||||||| ||||||| ||||| ||| | ||||| || Sbjct 400 ATCTCAAATCACACGCTGGAAAGAGTCTCTTATCCCTCGCATGGCGATGTTACTGGCCGT 341 Query 9022 TCTTGAATGGGGTGTTGAAGACGAGGAGTTGGCTGAACTGGCTAAGAAAGTAGCCAGAAT 9081 ||| || |||||| | |||||||| || |||| || |||||||| | || || Sbjct 340 TCTGGAGTGGGGTATGGAAGACGAAGAAATGGCGGAGTTGGCTAAGCGCCTGGCTGGATA 281 Query 9082 GCTGGCA---AAAGAAAAAGCCCCGAAGAACGGCGAATTCTTCGAGGCCTGATGTAGAAA 9138 ||| || |||||||| |||||| ||| | | | |||||||| |||| ||| Sbjct 280 TCTGTCACCAAAAGAAAACGCCCCG--GAA-GTTGCAGCTTTCGAGGCGTGATTGCGAAT 224 Query 9139 GACTGGATCAATCCACAGGAGTAATTATGACAAA 9172 ||||||||||| |||||||||||||||| |||| Sbjct 223 TACTGGATCAATTCACAGGAGTAATTATGGCAAA 190 >seq26876 Length=1038 Score = 100 bits (110), Expect = 7e-17 Identities = 79/94 (84%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 16192 CGGAGTTCAGCACCGACCGCCACAACCCAACCTGAGCCGTAGCC---ACTGGCTGTCCTG 16248 ||||| ||||||||| || ||||| || || ||| ||||||||| ||||||| ||||| Sbjct 725 CGGAGATCAGCACCGGCCACCACATCCAAAACTGTGCCGTAGCCCTAACTGGCTATCCTG 666 Query 16249 AATTCATCAGTGATAGTTATGCTGCGTCCTTCTA 16282 |||| ||||||||||||||||||| ||||||| Sbjct 665 CTTTCACCAGTGATAGTTATGCTGCGGCCTTCTA 632 >seq22233 Length=1593 Score = 96.9 bits (106), Expect = 9e-16 Identities = 75/87 (86%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 15767 AAAAGAGGCGGCGCTTACTACCGATTCCGCCTAGTTGGTCACTTCGACGCATCGTCTGGA 15826 |||||||||||| || || ||||| ||||| ||||||| |||||| ||||| | |||| Sbjct 450 AAAAGAGGCGGCTCTCACCACCGAA-CCGCCAAGTTGGTAACTTCGTCGCATTGACTGGG 392 Query 15827 ACTCCAACCATCGCAGGCTGAGAGGTC 15853 ||||||||||| ||||||||||||||| Sbjct 391 ACTCCAACCAT-GCAGGCTGAGAGGTC 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126690206152384