Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq13651 448 1e-121 seq16589 132 1e-26 >seq13651 Length=3921 Score = 448 bits (496), Expect = 1e-121 Identities = 699/991 (71%), Gaps = 14/991 (1%) Strand=Plus/Minus Query 22614 CCATACACCAGATTAATTCCTGCGGACGAGATTTATGATTGGGTAGACAGGCAGATCATC 22673 ||||||| | | | |||||||| ||||| | | || ||| || | | || || ||| Sbjct 2092 CCATACATCGGCCTGGTTCCTGCGAACGAGGTACAGGAGTGGATAAAGCGTCAAATTATC 2033 Query 22674 AGCGAAAGCGGAAACCTGTATAACCCGGATCATTTTCATCT-GCATACGGCTGACATTGC 22732 |||| ||| | ||||| |||||| || || || || | | ||| | | || Sbjct 2032 GACGAAGCCGGCAGCCTGTTTAACCCTGACCACGGACACCTTGTAGACGCCGATCTACGC 1973 Query 22733 GTTTATGTGGGCGTCATCAGCATTCGAGAAAAAAGGCCGGACGGTTCTTGGTCAATGCGA 22792 ||||||||||| || || || || ||||| ||||| || || || || || || Sbjct 1972 -TTTATGTGGGCATCGTCCGCGTTTGAGAAGAAAGGGCGCCATGTGCTCGGCCAGGCTGA 1914 Query 22793 AGAAGTGATGATGCGTGCTGGTGGATGGCAAAAGTCGAGAATGGAACAGCAGATGCATGA 22852 ||| || ||||||||| ||||| ||||| ||| | |||||||||||||||||| ||| Sbjct 1913 AGAGGTAGCGATGCGTGCCGGTGGCTGGCAGAAGGCCAGAATGGAACAGCAGATGTGTGA 1854 Query 22853 ATGGTTCGG-GAGAATCCCAGCATTCATTATCACGCTGGCCGCTGACTATTGCGCGGAGT 22911 |||||||| ||| || | |||||| ||||||||||| || ||||| ||| | ||| Sbjct 1853 GTGGTTCGGCGAGGTGCCGAA-ATTCATCATCACGCTGGCTGCCGACTACTGCTCACAGT 1795 Query 22912 GCTCCGACTTGGATTTCTGCGCGCTGGTAGAACATGAGCTTTACCACATTTGCCACGCTA 22971 | || || || || ||||| ||| | || ||||||||||||||||| || || | Sbjct 1794 GTTCTGATGCTGAGTTTTGCGCCCTGATCGAGCATGAGCTTTACCACATCGCGCAGGCAA 1735 Query 22972 CTGATGAATTCGGTGCTCCGAAATTTAAACGGGATACCGGATTGCCGGTGCTGAAAATGC 23031 | || || ||||| || |||||||| || ||| || |||||||||||| ||| Sbjct 1734 CAGACGATTTCGGCGCACCGAAATTCAACAAGGAA---GGCCAGCCGGTGCTGAAGCTGC 1678 Query 23032 GCGGTCACGATGTTGAGGAATTCGTTGGCGTCGTTCGCCGCTACGGTGCAAGCCGTGACG 23091 |||| ||||| ||||| || || |||||||| |||||||| || || || ||| || | Sbjct 1677 GCGGCCACGACGTTGAAGAGTTTGTTGGCGTAGTTCGCCGGTATGGCGCCAGCGTGGAAG 1618 Query 23092 TGCAGGAAATGGTTGATGCGGCAAACAATAGGCC---GGAAGTGGCTCACGTCGATGTGG 23148 | |||||| ||||||||||||| |||| |||| ||| ||||| || | | | | Sbjct 1617 TTCAGGAACTGGTTGATGCGGCCAACA---GGCCCGCGGAGGTGGCACAACTAAACATTG 1561 Query 23149 CGAGGGCATGCGGAACGTGCTTATTAAAATTGGCGTGAAATTTTTGACTGATTATGACGA 23208 | || || ||||| | ||| | | | |||||| |||| || ||||| | |||| Sbjct 1560 CCAGAGCGTGCGGTAACTGCATGCTGAGGCTGGCGT-AAATATTGGACTGTATTGGACGG 1502 Query 23209 GTGGTGATTTATGGCGGTACTAAAAGGACACGTTAAGTCATTCATTGTTCAGTCATTAGC 23268 |||||||||||||| | | ||||| | | || || | ||||| ||||||| | || Sbjct 1501 ATGGTGATTTATGGCTGCATTAAAACCAGATGTAAAAGCCTTCATCATTCAGTCGCTTGC 1442 Query 23269 CTGCTTTGATACCCCATCTCAGGTGGTCGATGCCGTCAATAAAGAATTCGGCATTGCGAT 23328 |||||||||||||| | ||| || || ||||| | ||||| || || | || Sbjct 1441 GTGCTTTGATACCCCTACGTTGGTCGTGGAGTCCGTCCAAAAAGAGTTTGGGCTAAAAAT 1382 Query 23329 TACTCGGCAGCAGGTTGAATCTCATGACCCGACAAAGGCAAATGGTAGGGGGTTGGCTCA 23388 || || ||||||||||||||||| ||||||||||||| | || | | | ||||| | Sbjct 1381 CACGCGTCAGCAGGTTGAATCTCACGACCCGACAAAGGTTAGCGGCAAGTCGCTGGCTAA 1322 Query 23389 AAAGTGGGTGGATATATTCAACTCTACGCGAGAGCGCTTCCAGAATGAAATCTCCGACAT 23448 |||||||| || | ||| | | ||||| ||||| ||| ||| ||||| || || || Sbjct 1321 GAAGTGGGTAGACCTGTTCCATACGACGCGGGAGCGATTCAAGACAGAAATTTCAGATAT 1262 Query 23449 CCCCATAGCCAATAAAGCCTATCGTCTGCGCGTGCTGCAAAGAATGTCTACGTCGGCCGA 23508 || || ||||| || ||||| || |||||||| || | | ||| | ||| |||| Sbjct 1261 TCCGATCGCCAACAAGGCCTACCGGCTGCGCGTTCTTGATCGCATGGCGACGCGAACCGA 1202 Query 23509 GAATATGAAAAACATGGGGATGACAGCTCAGCTACTGGAGCAGGCTGCTAAAGAGGTTGG 23568 | ||||| ||| | || | |||||| | | |||||||| || |||||| || Sbjct 1201 AACCATGAAGAACTACGCATTGGCCGCTCAGATCGTCGAGCAGGCCGCGAAAGAGTGCGG 1142 Query 23569 TGATGCGTATTCAAATAAGCAGAGGGTTGAA 23599 ||||||||| | || ||||| | | ||||| Sbjct 1141 CGATGCGTATACCAACAAGCAAAAGATTGAA 1111 Score = 338 bits (374), Expect = 2e-88 Identities = 387/520 (74%), Gaps = 0/520 (0%) Strand=Plus/Minus Query 20224 AAAACAAAACTTAGCGCCGCAATGCTGGCTCTGATTGCTGCTGGCGCGTCAGCTCCCGTT 20283 ||| ||||||| ||||||| ||||||||| ||||| || || ||||| || ||||| || Sbjct 3531 AAATCAAAACTCAGCGCCGTAATGCTGGCCCTGATCGCGGCCGGCGCATCGGCTCCTGTC 3472 Query 20284 CTTATGGCTCAGTTTCAGCAAGAAAAAGAGGGCGTGCGGCTGGTGGCTTACCCAGACGGC 20343 | ||| | ||||||||| |||| ||||| || ||| ||| || |||| ||||| Sbjct 3471 ATGATGTCGCAGTTTCAGGAAGAGAAAGAAGGTCAGCGCCTGACCGCATACCAGGACGGT 3412 Query 20344 GGCGGAATCTGGACTATTTGCGGCGGTGTAACTCGCGTTGACGGTAAGCCGGTAGTAAAA 20403 | ||||||||||| ||||||||||| || || || |||| || ||| || || Sbjct 3411 GTTGGAATCTGGACAATTTGCGGCGGCGTGACGATGGTCAACGGCCAGAAGGTTGTGAAG 3352 Query 20404 GGTATGAAGTTGACCGCCGAGCAGTGCGCGAAGATTGATGCTCTGGAGCAGAAAAAGGCG 20463 || | ||||||||||||||||| | ||||||| || |||||||||||||| Sbjct 3351 GGGCAGCGCCTGACCGCCGAGCAGTGCAAGCAGATTGACGCAGCAGAGCAGAAAAAGGCT 3292 Query 20464 CTCGACTGGGTGGATCGTAACGTTAAAGTGCCACTCACCGAACCTCAGAAGACAGGGATA 20523 ||||||||||| || || ||||| || || | || ||||||||||| || || || Sbjct 3291 CTCGACTGGGTAGACCGCAACGTCAAGGTAACGCTGACCGAACCTCAAAAAGTTGGTATC 3232 Query 20524 GCGTCGTTCTGCCCGTGGAATATCGGTCCGGGGCGCTGTTTCCCGTCCACGTTCTACCGC 20583 || || ||||| |||||||| ||||| || || || ||| | ||||| || ||| Sbjct 3231 GCCTCATTCTGTCCGTGGAACATCGGCCCTGGAAAATGCTTCACCTCCACCTTTTACAAG 3172 Query 20584 AAATTAAATGCTGGTGACCGCATCGGCGCTTGCCGCGAGATTAAACGCTGGATTTGGGAT 20643 || | || || || |||||||| || || ||||| || || |||||||| | || Sbjct 3171 AAGCTGAACGCCGGCGACCGCATTGGTGCCTGCCGAGAAATCCGCCGCTGGATATACGAC 3112 Query 20644 GGTGGCCGCGATTGCCGCATACGCTCAAATAACTGTTACGGGCAAATAGAACGCCGTGAC 20703 | |||||| ||||||||||| ||||| |||||||| |||||||| || | ||| || || Sbjct 3111 GCTGGCCGAGATTGCCGCATCCGCTCGAATAACTGCTACGGGCAGATCGTACGGCGCGAT 3052 Query 20704 CAGGAAGCGGAATTATCGTGCTGGGGATTGGACGGATGAA 20743 |||||||| ||| || | ||||||||||||||| ||||| Sbjct 3051 CAGGAAGCCGAACTAGCTTGCTGGGGATTGGACAAATGAA 3012 Score = 107 bits (118), Expect = 6e-19 Identities = 144/197 (73%), Gaps = 5/197 (3%) Strand=Plus/Minus Query 21050 TGTTGCTGATCGGCTGCTCGACTACACGTACCGTTTACGTGCCAGCGCAATGCGTACCAC 21109 |||||||| | || |||||||||||||| ||||| ||||| || |||||||| || Sbjct 2711 TGTTGCTGGTGGGTTGCTCGACTACACGCACCGTCTACGTTCCCGCGCAATGTCAGCCGA 2652 Query 21110 TGCCAGCGGAACTGACACAGCCAGTGCTGGTGCCGCTGCCACCGGCTGCCGATTGACGTA 21169 | ||| || ||||| || || ||||||| ||| ||||| ||||| || |||| || Sbjct 2651 TACCATCGTCGCTGACGCAACCGGTGCTGGCGCCACTGCCTCCGGCACCC---TGACATA 2595 Query 21170 CGCACAGGCTGTTTACTGGATTGACCCGCTACTGACGGTAATTGACCAGGCTAATAGCCA 21229 | ||||| || |||||||| ||||| ||| ||| | ||| | || || | ||| Sbjct 2594 CTGTCAGGCGGTGCTGTGGATTGATCCGCTGCTGGCGGCGCTCGACAAAGCGAACAACCA 2535 Query 21230 ACTAGCCGGC-ATACGC 21245 ||| || ||| |||||| Sbjct 2534 ACT-GCTGGCGATACGC 2519 >seq16589 Length=2855 Score = 132 bits (146), Expect = 1e-26 Identities = 119/146 (82%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 371 CACGGAATTTAAAATCCCTCGGCGTTCGCGCTGTGCGGGTTCAAGTCCCGCCCCGGGCAC 430 || || ||||||||||||||||| | | |||||||||||||||||||||||||||| || Sbjct 816 CAAGGGATTTAAAATCCCTCGGCTTATG-GCTGTGCGGGTTCAAGTCCCGCCCCGGGTAC 758 Query 431 CATTGATTTAAAAA---GAATTAAAACAAGCACTTATGTGCAATGTCGTAGACCGCCGAG 487 || || |||| |||| | | ||||| | | | ||||||||||||||||||| Sbjct 757 CAGGGAACGAAAATACCGAATAATCA-AAGCAATAAGTAGTAATGTCGTAGACCGCCGAG 699 Query 488 AGGCGGtttttttGTGCCTGAAAGTC 513 ||||||||||||||||||||||| || Sbjct 698 AGGCGGTTTTTTTGTGCCTGAAATTC 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154863487706368