Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_019527.1 Length=43551 Score E Sequences producing significant alignments: (Bits) Value seq9276 316 6e-82 >seq9276 Length=6644 Score = 316 bits (350), Expect = 6e-82 Identities = 428/592 (72%), Gaps = 16/592 (3%) Strand=Plus/Plus Query 6416 GTTCAGGTGGTGAATGGCGTTATCAAGACGCTCACAGCGAGGCCAGTATTTTGAGCCACG 6475 ||| ||| |||||| || ||||| || ||||| ||| ||||||||||| | || Sbjct 5141 GTTGAGGACGTGAATTGCATTATCCAGGCGCTCGGCGCGCGGCCAGTATTTGCTTGCCCG 5200 Query 6476 CTTGACGATAGTCTTGCGCGCCATCTCAGACCAATCAGTTTTCCATGGTGATGACTTACC 6535 ||||||||| ||||| |||||||| || | ||| || ||||| || ||| Sbjct 5201 CTTGACGATTGTCTTACGCGCCATTTCCGCCCAGAACGTCTTCCACGGGCCGTTCTT--- 5257 Query 6536 TGACTTGAAGCTCTGGCTTCGCTGCATGATGGCATTGATCTCATCAACGCTCATTTCCTC 6595 || ||| |||| | ||| | | | || || ||||| | | |||||||||||| Sbjct 5258 TGCCTTA-----CTGG--TAGCTTC--GGTTGCCTTTATCTCTGCGAGGCTCATTTCCTC 5308 Query 6596 AGTCAGGTAGTCACCCTGCGCGGTTTTTACAGTGCAGTACCCGCCGACAACGGAGCCTCG 6655 || || || || || | | || || ||||||||||| |||||||| || || || Sbjct 5309 TGTTAGATAATCTCCGTCGGGAGTCTTAACAGTGCAGTAGCCGCCGACTACATCACCGCG 5368 Query 6656 GTCTCCGAAGGCATTGTATTTGTGGGTTGGTGCGCTATCAAGGCCGTTCGACTCGTAGGT 6715 || ||||| || ||||| || || || || |||||||| || || ||||| |||||||| Sbjct 5369 ATCGCCGAAAGCGTTGTACTTATGAGTAGGCGCGCTATCCAGTCCATTCGATTCGTAGGT 5428 Query 6716 GTCATTGGCGCAAACCAGCTTGCACTGACCCCACTGAATAGCCCCAGACACCTGAGCAAG 6775 || || | | |||||||||||||||| ||||||| ||| | ||| | ||||||| || Sbjct 5429 ATCGTTCGAGTAAACCAGCTTGCACTGTCCCCACTTAATCGACCCGGTAGCCTGAGCGAG 5488 Query 6776 GTGAAGCAAGCCCATGTAGCTGATGTCGAGATGCACACC--TCCATCGCGAGGCACCAGG 6833 ||||| | ||||| |||||||||||||| ||||||| ||||| || || || ||| Sbjct 5489 ATGAAGAAGCCCCATATAGCTGATGTCGAG--GCACACCATCCCATCTCGCGGAACGAGG 5546 Query 6834 TAGGCAAGCTTGGCCGCCGGGTTCAACGTAATGCCAATGGCCGCCACGTTGATGATCGCA 6893 || || ||||| || ||||||| ||| |||||||| ||||| |||||||| ||||| Sbjct 5547 TATGCCAGCTTACTGGCTGGGTTCAGCGTTATGCCAATTGCCGCAACGTTGATAATCGCG 5606 Query 6894 TTCTGCGCGCTGCTAGGATTTGCCATTGCCACCTTGGCAAGGTAATCATTCTTCTGGAAT 6953 ||||||||||| ||||| | || ||| || | ||| |||||||||||||||| Sbjct 5607 TTCTGCGCGCTTGCCGGATTCCCGATCGCCGTTTTCGTCAGGAAATCATTCTTCTGGAAA 5666 Query 6954 GCCTGAATGGCGAACTGCTGTTCTTTCTGCCATGTGATCGAATTGTCAGACA 7005 || || |||||||| ||| ||| |||||| | || | ||||| || Sbjct 5667 AGTTGCATCGCGAACTGGCTTTCCTTCGCCCATGTAACTGATTGGTCAGTCA 5718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139180744806824