Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_019545.1 Length=47355 Score E Sequences producing significant alignments: (Bits) Value seq13651 114 4e-21 seq24567 95.1 4e-15 >seq13651 Length=3921 Score = 114 bits (126), Expect = 4e-21 Identities = 473/739 (64%), Gaps = 19/739 (3%) Strand=Plus/Minus Query 44471 AACATGCCGTACTGGTGGTCAGGGCTGCTTGGttttttttCTGTTCTGAGTTTGCAAGAT 44530 ||| | ||||| ||||||||| | || || || ||||||| | ||| |||| ||| Sbjct 3817 AACCTACCGTATTGGTGGTCAAGCCTTCTCGGCCTTTTTTCGCTGCTGTCGCTGCAGGAT 3758 Query 44531 TATGTATTTATCCTTGGCGCTCTGATCTCGGCCTATTTCACCATTAAGACCTACTACGCG 44590 || || |||||| | || || |||| || |||| || || || ||||| |||||||| Sbjct 3757 TACGTCTTTATCGTAGGGGCGTTGATATCCGCCTTCTTTACGATCAAGACGTACTACGCC 3698 Query 44591 AAGCGGAAAGAAGAACGTGAACGGCTTGATGAAGAGaaaaaaaGAACGCAGTTATTGGCT 44650 || ||||| || || || || || || | || ||| | | ||| | | ||| Sbjct 3697 AAACGGAAGGAGGAGCGAGAGCGCCTGGTAGAGGAGCGCCGACGCACGAAAATCATGGAG 3638 Query 44651 AAGTACCTTGCTGATGTGGCCGTTAAACCAGGTCGAGATCGCCCAGCAGCGGCTGAGGTC 44710 | ||||| | ||| | | | |||| | || || ||||| || | ||| || Sbjct 3637 GACTACCTGCACGGTGTATCAGCCAGGCCAGAAAGCGAGCGACCAGCGGCAGTTGAAGTT 3578 Query 44711 GTAACAGAGGCAATGAAACGCATCTCTGGTGAGGTGGCAAAATAACTATGGTCTCGACAA 44770 || | || || ||| |||| | | | || | ||| | | | | | | Sbjct 3577 GTTGCGGAAGCGATG---CGCA------GAGCAGAGGGATGATA--TGTCGATTAGC--A 3531 Query 44771 AAACAAAGTTAAGTGCTGCCGTTCTGGGGCTGGTGCTTGCCGGTGCGTCTGCGTCAGTGA 44830 || |||| | || || | | |||| ||| | ||||| || || || | || | Sbjct 3530 AATCAAAACTCAGCGCCGTAATGCTGGCCCTGATCGCGGCCGGCGCATCGGCTCCTGTCA 3471 Query 44831 T--TCTCGACCAGTTTCTGGACGAAAAAGAAGGCAACCACACCACGGCATACCGAGATGG 44888 | | ||| ||||||| ||| || |||||||| | | | || ||||||| || || Sbjct 3470 TGATGTCG--CAGTTTCAGGAAGAGAAAGAAGGTCAGCGCCTGACCGCATACCAGGACGG 3413 Query 44889 CTCCGGCATATGGACCATCTGTCGCGGTGCCACAAAGGTGGACGGTAAACCCGTTGTTC- 44947 || || ||||| || || |||| | || | ||| |||| | ||||| Sbjct 3412 TGTTGGAATCTGGACAATTTGCGGCGGCGTGACGATGGTCAACGGCCAGAAGGTTGTGAA 3353 Query 44948 GGGGCATGACGCTGTCAAAGGCGAAATGCGACCAGGTTAACGCTATTGAACGTGACAGGG 45007 |||||| | ||| | | | | ||| | ||| || |||| || | | | || Sbjct 3352 GGGGCAGCGC-CTGACCGCCGAGCAGTGCAAGCAGATTGACGCAGCAGAGCAGAAAAAGG 3294 Query 45008 CGCTGGCGTGGGTGGAGCGCAATATTAAAGTGCCGCTGACGGAACCACAGAAAGCAGGTA 45067 | || | ||||| || ||||| | || || ||||||| ||||| || |||| |||| Sbjct 3293 CTCTCGACTGGGTAGACCGCAACGTCAAGGTAACGCTGACCGAACCTCAAAAAGTTGGTA 3234 Query 45068 TTGCTTCTTTCTGCCCTTACAACATCGGCCCAGGAAAATGTTTCCCGTCTACGTTCTATA 45127 | || || ||||| || | ||||||||||| |||||||| ||| | || || || || | Sbjct 3233 TCGCCTCATTCTGTCCGTGGAACATCGGCCCTGGAAAATGCTTCACCTCCACCTTTTACA 3174 Query 45128 AGCGAATTAATGCTGGCGACCGTAAAGGAGCCTGTGAAGCTATTCGCTGGTGGATTAAAG 45187 || | || || |||||||| | || ||||| || || ||| | ||||| | | Sbjct 3173 AGAAGCTGAACGCCGGCGACCGCATTGGTGCCTGCCGAGAAATCCGCCGCTGGATATACG 3114 Query 45188 ACGGTGGCCGCGATTGTCG 45206 ||| |||||| ||||| || Sbjct 3113 ACGCTGGCCGAGATTGCCG 3095 >seq24567 Length=1281 Score = 95.1 bits (104), Expect = 4e-15 Identities = 168/242 (69%), Gaps = 10/242 (4%) Strand=Plus/Minus Query 36890 CGGATTTGCGAGCTTTGTGTTCAGCGGTGGTCCGGGAACCGGGAAAAACCATCTTGCGGC 36949 ||| |||| | ||| | |||||||| || ||||| |||||||| ||||| ||||| Sbjct 604 CGGGTTTGGTGGGTTTATCTTCAGCGGCGGATGCGGAACGGGGAAAAATCATCTGGCGGC 545 Query 36950 GGCAATCGGAAATCATCTGCTGGCCGGCGGTCATAGT--GTTCTGGTGGTAACCATTCCT 37007 ||| ||||| ||| | |||| | | || | ||| || ||||| || ||||| ||| Sbjct 544 GGCGATCGGGAATGTTTTGCTCTCAGCTGG--AAAGTCCGTGCTGGTCGTGACCATACCT 487 Query 37008 GACCTGATGCTCAGGGTTCGTGAGTGCTACGACG-GTGGGCAATCA-----GAAGCGTCC 37061 ||||||||| | | |||| || |||| | | | |||||| | || || Sbjct 486 GACCTGATGATGCGCTTTCGCGAAACCTACCAAGAGGGGGCAAAGACCAGTGAGGCAAAA 427 Query 37062 CTGCTTGATGACCTTTGCAAAGTTGACCTGCTGGTACTGGATGAAGTCGGTATTCAGCGT 37121 || | |||||||| |||| || ||||||||| | ||||| || | ||| | |||||| Sbjct 426 CTCATGGATGACCTGTGCAGCGTAGACCTGCTGATCCTGGACGACATTGGTGTGCAGCGT 367 Query 37122 GG 37123 || Sbjct 366 GG 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151348224715016