Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq13651 214 5e-51 seq680 89.7 1e-13 >seq13651 Length=3921 Score = 214 bits (236), Expect = 5e-51 Identities = 345/492 (70%), Gaps = 13/492 (3%) Strand=Plus/Minus Query 41825 GCCGGGGCTTCCGCACCCGTGAT--TCTCGATCAGTTTCTGGATGAGAAAGAGGGTAACA 41882 ||||| || || || || || || | ||| ||||||| ||| |||||||| ||| | Sbjct 3492 GCCGGCGCATCGGCTCCTGTCATGATGTCG--CAGTTTCAGGAAGAGAAAGAAGGTCAGC 3435 Query 41883 GCTTGACAGCATATCGCGACGGCGGCGGACTCTGGACCATTTGCCGTGGTGCAACAATGG 41942 || |||| ||||| | ||||| | ||| ||||||| |||||| | || | || |||| Sbjct 3434 GCCTGACCGCATACCAGGACGGTGTTGGAATCTGGACAATTTGCGGCGGCGTGACGATGG 3375 Query 41943 TTGATGGCAAGCCAGTAGTACAGGGCATGAAGCTGTCAGCTGAGAAATGCGCCCAGGTAA 42002 | | ||| || || || |||| | ||| | || ||| | ||| ||| | Sbjct 3374 TCAACGGCCAGAAGGTTGTGAAGGGGCAGCGCCTGACCGCCGAGCAGTGCAAGCAGATTG 3315 Query 42003 ACGCCATTGAACGCGACAAGGCGCTGGCGTGGGTTGACCGAAATATCAAAGTACCACTGA 42062 |||| || | | ||||| || | ||||| ||||| || |||| ||| | |||| Sbjct 3314 ACGCAGCAGAGCAGAAAAAGGCTCTCGACTGGGTAGACCGCAACGTCAAGGTAACGCTGA 3255 Query 42063 CCGAACCACAGAAAGCGGGTATCGCTTCTTTCTGCCCATATAACATCGGCCCCGGAAAAT 42122 ||||||| || |||| |||||||| || ||||| || | ||||||||||| ||||||| Sbjct 3254 CCGAACCTCAAAAAGTTGGTATCGCCTCATTCTGTCCGTGGAACATCGGCCCTGGAAAAT 3195 Query 42123 GCTTCCCATCGACCTTCTATAAGCGCATCAACGCAGGTGACCGCATCGGTGCATGCGAGG 42182 ||||| | || ||||| || ||| | ||||| || |||||||| ||||| ||| | Sbjct 3194 GCTTCACCTCCACCTTTTACAAGAAGCTGAACGCCGGCGACCGCATTGGTGCCTGCCGAG 3135 Query 42183 CAATCCGCTGGTGGATTAAAGACGGTGGCCGCGATTGCCGCCTAACCAAAGGCCAGAAGA 42242 ||||||| | ||||| | |||| |||||| ||||||||| | || || ||| | Sbjct 3134 AAATCCGCCGCTGGATATACGACGCTGGCCGAGATTGCCGC--ATCC----GCTCGAATA 3081 Query 42243 ATGGCTGCTATGGTCAGGTTGAGCGACGGGACCAGGAAAGCGCGCTGGCGTGCTGGGGGT 42302 | |||||| || ||| | | || || || |||||| || || || |||||||| | Sbjct 3080 A---CTGCTACGGGCAGATCGTACGGCGCGATCAGGAAGCCGAACTAGCTTGCTGGGGAT 3024 Query 42303 TAGACCAATGAA 42314 | ||| |||||| Sbjct 3023 TGGACAAATGAA 3012 Score = 147 bits (162), Expect = 6e-31 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 42583 ACCTGTGATCTGCCTGTTCCTGCTGACATTGCTGGTGGGCTGCTCGAATACGCGTACCGT 42642 || ||||||||| |||| ||||| | ||||||||||| ||||||| ||| || ||||| Sbjct 2737 ACGTGTGATCTGGCTGTGCCTGCCGCTGTTGCTGGTGGGTTGCTCGACTACACGCACCGT 2678 Query 42643 TTACGTTCCAGCGCAATGCACGCCGATACCGACGGACCTGACGCAGCCGATGATAGTACC 42702 |||||||| |||||||| ||||||||| || |||||||| ||| || | | || Sbjct 2677 CTACGTTCCCGCGCAATGTCAGCCGATACCATCGTCGCTGACGCAACCGGTGCTGGCGCC 2618 Query 42703 GCTGCCGCCGGCTCAATAACGTACTGCCAGGCTGTGCTCTGGATTAAGCCGCTGCTGGC 42761 ||||| ||||| | | || ||||| ||||| ||||| |||||| | ||||||||||| Sbjct 2617 ACTGCCTCCGGCACCCTGACATACTGTCAGGCGGTGCTGTGGATTGATCCGCTGCTGGC 2559 >seq680 Length=42727 Score = 89.7 bits (98), Expect = 1e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 10455 AAGGCGGGTATTTCAATAGGCCAGTATAACGCAGCAATGCGTATGCTTCCGGCGCAGTTT 10514 || || |||||||| | |||||||| |||||| ||||| |||| ||||| | Sbjct 1619 AAAGCCGGTATTTCTGTCGGCCAGTACCGCGCAGCGATGCGGCAGCTTGGCCCGCAGATC 1678 Query 10515 ACCGATATAGCTACGCAGCTAGCGGGCGGGCAGAACCCATGGCTGATTCTGCTTCAGCAG 10574 ||||| || | |||||||| |||||||| ||||| | ||||||| | |||||| Sbjct 1679 ACCGACATCGTAACGCAGCTGCAAGGCGGGCAAAACCCGTTTACGATTCTGGTGCAGCAG 1738 Query 10575 GGCGGTCAGGTTAAGGACTCCTTTGGCGG 10603 ||||| ||| | || |||||||| || || Sbjct 1739 GGCGGCCAGATCAAAGACTCCTTCGGGGG 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141816392399976