Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq9276 453 3e-123 seq36678 208 2e-49 >seq9276 Length=6644 Score = 453 bits (502), Expect = 3e-123 Identities = 949/1395 (68%), Gaps = 53/1395 (4%) Strand=Plus/Plus Query 25126 CGTTATTTGATAAGAAGTGAAGGTTTCCCAACCTTGAGTTGAGCGCCGGGGATATTTATT 25185 ||| | ||||| | | ||| ||||| |||| ||| | ||||| || || | ||| Sbjct 4399 CGTCACTTGATGATTAATGATGGTTTGCCAAGCTTTATCTGAGCACCAGGAACGGCGATT 4458 Query 25186 CCTGCTTTTAGTTGGTGCTTGATTGCCAACTTGTC-GGCTTTA--ATTGTCGTTTCAAAC 25242 ||||| | || || |||||||| |||| ||| || ||||| | | |||| ||| || Sbjct 4459 CCTGCGTCCAGCTGATGCTTGATAGCCAGCTTATCTGGCTTGACGACTGTC---TCATAC 4515 Query 25243 TCAACGTATTC--TTG--AGGAATGGCGCTTGAGTCGATGATTTCTACAGTTTCTGACGG 25298 |||||| |||| | | |||| | || | ||| ||| || || | || || Sbjct 4516 TCAACGAATTCAATCGGCAGGATAGATGCATCAGT----GATATCAACCTTGCGGGATGG 4571 Query 25299 TTTGCGGATTGTTACCTGGTGGATACCTGCTCTAATCTTTTTCTTGCCAACCATTTCAAG 25358 || | ||||| ||||| | || |||| || ||||| || | | ||||| Sbjct 4572 AACACGAACAGTTACTTGGTGCAAGCCCGCTCGGATTGACTTCTTCCCGGCTGTCTCAAG 4631 Query 25359 CGATGACGCTATATACGCCATAATGCTGTCAATCTTATTTTGAATTACTGCTGCTCGTTC 25418 |||| ||||| ||| || | ||||| |||||| |||| | ||| | |||| ||| Sbjct 4632 CGATCTGGCTATGTACTCCTTGATGCTTGAAATCTTGTTTTCGACTACCGACGCTCTTTC 4691 Query 25419 ATTCAGTGACTTTGCCTC-TTCCTTGAGGCGTTCAGCATA-ACCAGATTCATTTTTAATA 25476 |||||||||| || ||||| | || | ||||||| | | | | | ||||| Sbjct 4692 CAGTAGTGACTTTGATTCATTCCTCAAAGCCT-CAGCATAGAGCTGCT-CGTTTTTGCAG 4749 Query 25477 ATGGCAAGAAGTTGCTCTACTTTATCGGTAAATTCTCCTTCCATGCCTTCTATTGTGTCA 25536 |||||||| | |||||||| ||||| | || || || || ||||| || ||||| Sbjct 4750 ATGGCAAGCAACTGCTCTACCTTATCAACGAGCTCGCCATCAATTCCTTCGATAGTGTCG 4809 Query 25537 GCAATCATCTCTGGTTCTAAATCTGAATCCATCAATTTTGCGTATTCATTGGCAATTTCA 25596 || ||||||||||| |||||| | |||||||| | || ||||| ||||| || || || Sbjct 4810 GCGATCATCTCTGGCTCTAAACCGGAATCCATGAGCTTCGCGTAATCATTTGCGATGTCG 4869 Query 25597 TACAGTTTGCTCAC----TGGCAACCTCCAGTTTCGCTTTGCATTCTATGTAAATGGCTT 25652 || || ||||||| | || | || || | ||| |||| ||| || ||||| | Sbjct 4870 TATAGCTTGCTCATGACGTCGCTCCTTCAAGCTGCGCCTTGCGCTCTGAATAGATGGCCT 4929 Query 25653 GTACGTTCTGCTGCAATTTCATTCCA-GATGTCAGGCGATATGCTTCTGCAAAATATCGC 25711 | || |||||||| | ||||| ||| || | | || | || || || || || || Sbjct 4930 GAACATTCTGCTGAAGCTTCATGCCACGAGTTAACTTGA-ACGCATCAGCGAATAATGGC 4988 Query 25712 TTCAAATCATCCATGTTTTCTGCCTGAGCCATTTCATCGCAAAGAAGTTGTGCTTTATCC 25771 || | ||||||||| |||||| | |||| | | ||| | || | | || Sbjct 4989 TTGAGTTCATCCATGCTTTCTGACGCTTCCATCTTCTGGCAGATTCCTTCTACCAGCTCG 5048 Query 25772 ATTATTTCCTGCTGGCGT---TTCCGTTCATCTTCGCGGATATCTTCC---TCTGATTTG 25825 | ||||||| ||| ||| ||| ||||| ||| |||| || | || Sbjct 5049 TAAACCTCCTGCTTACGTGCATTC---TCACCTTCG---ATAACTTCGCTTTCAGGCGTG 5102 Query 25826 TGCGGCATAACTGGCTCA--GTCCATACACCTTCTTCTTCGTTTAGTACGTGAATAGCAC 25883 |||||||| | ||||| || ||| | |||| |||||||| || |||||||| ||| Sbjct 5103 TGCGGCATTATCGGCTCTTGGTGCATGC--CTTCCTCTTCGTTGAGGACGTGAATTGCAT 5160 Query 25884 TATCAAGACGTGATGCCTTAGGCCAATACTTGCTTGCACGCTTTACGACCGTCTTTCGCG 25943 |||| || || || ||||| || |||||||| ||||| |||| ||||| |||| Sbjct 5161 TATCCAGGCGCTCGGCGCGCGGCCAGTATTTGCTTGCCCGCTTGACGATTGTCTTACGCG 5220 Query 25944 CCATCTCATTCCAGTGATTTACCCATGGTCCTTTATCGCTGAATGCTGCCTTGCTTGTT- 26002 |||| || |||| | ||| || || || | |||||| || || Sbjct 5221 CCATTTCCGCCCAGAACGTCTTCCACGGGCCGTTCTT---------TGCCTTACTGGTAG 5271 Query 26003 -TTCCTTACAGCCTCAATTTCAGCCAGACTCATCTCTTCCGTTAGATAATCACCTGCTGG 26061 ||| | |||| || || || || ||||| || || ||||||||||| || | || Sbjct 5272 CTTCGGTT--GCCTTTATCTCTGCGAGGCTCATTTCCTCTGTTAGATAATCTCCGTCGGG 5329 Query 26062 CGTCTTAACTGTGCAGTAAACACCAACGATATCGCCACGATCACCGAAGGCGTTGTATTT 26121 |||||||| |||||||| | || || | ||| || ||||| ||||| |||||||| || Sbjct 5330 AGTCTTAACAGTGCAGTAGCCGCCGACTACATCACCGCGATCGCCGAAAGCGTTGTACTT 5389 Query 26122 ATGGGTTGGTGCTTTATCAAGCCCGTTTGACTCATAGGTATCGTTAGCATGAACAAGTTT 26181 ||| || || || |||| || || || || || ||||||||||| | | ||| || || Sbjct 5390 ATGAGTAGGCGCGCTATCCAGTCCATTCGATTCGTAGGTATCGTTCGAGTAAACCAGCTT 5449 Query 26182 TGCCTGACCCCATGAGATAACACCAGACTCCATTGCAATATGGAGCAATCCCATATAGCT 26241 ||| ||||| || || | || || | ||| || | ||||||||||| Sbjct 5450 GCACTGTCCCCACTTAATCGACCCGGTAGCCTGAGCGAGATGAAGAAGCCCCATATAGCT 5509 Query 26242 GATATCAAGGCAAACCATGCCGTCGCGAGGAACCAGATAAGCCAGTTTGCTAGCCGGGTT 26301 ||| || ||||| ||||| || || || ||||| || || ||||| || || || ||||| Sbjct 5510 GATGTCGAGGCACACCATCCCATCTCGCGGAACGAGGTATGCCAGCTTACTGGCTGGGTT 5569 Query 26302 TAAGGTGATACCGATCGCCGCAACATTGATGATGGCGTTCTGTGCGCTGGTTGGATTTGC 26361 | || || || || |||||||| ||||| || |||||||| ||||| | ||||| | Sbjct 5570 CAGCGTTATGCCAATTGCCGCAACGTTGATAATCGCGTTCTGCGCGCTTGCCGGATTCCC 5629 Query 26362 CAGTGCTGTTTTAGCCAGGTAATCGTTTTTCTGGAAATACTGAATTGCAAACTGGCTTTC 26421 | || ||||| | |||| |||| || ||||||||| || || || ||||||||||| Sbjct 5630 GATCGCCGTTTTCGTCAGGAAATCATTCTTCTGGAAAAGTTGCATCGCGAACTGGCTTTC 5689 Query 26422 CTTAGCCCATGTCACCGTCTGTTCAGTCAATGCTCCGCAGAATAACTGCTCTTGCTGTTT 26481 ||| |||||||| || | || ||||||| || |||| |||||| | || |||||||| Sbjct 5690 CTTCGCCCATGTAACTGATTGGTCAGTCAGCGCGCCGCTAAATAACGGTTCCTGCTGTTT 5749 Query 26482 AACGAATTCAACGAT 26496 |||||||||| ||| Sbjct 5750 CACGAATTCAATGAT 5764 >seq36678 Length=505 Score = 208 bits (230), Expect = 2e-49 Identities = 184/227 (81%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 31920 GAATTACTGGATCAATCCACAGGAGTCATTATGACAAATACAGCAAAAATACTCAACTT- 31978 |||||||||||||||| ||||||||| |||||| ||||||| || | || |||| || Sbjct 227 GAATTACTGGATCAATTCACAGGAGTAATTATGGCAAATACTGCTGAGGTAATCAAATTT 168 Query 31979 CGGCAGAGGTAACTTTGCCGAACAGGAGCGAAGAGTGGCTGATATCGATGATGGTTACAC 32038 | | || ||| | || || |||||| |||||||||||||||||||||| || || || Sbjct 167 CCGAAGCTTGAACCTGGC-GAGCAGGAGAGAAGAGTGGCTGATATCGATGACGGATATAC 109 Query 32039 CAGATTCGCTAACGAGCTGCTGGAAGCTATCGCAAGTGCCGATTTAACCGCTCGCCAGTT 32098 | | ||||||||||||||||||||||||||||| | || |||||||| || || || || Sbjct 108 CCGTGTCGCTAACGAGCTGCTGGAAGCTATCGCAGGCGCAGATTTAACAGCGCGGCAATT 49 Query 32099 GAAAGTTATGCTGGCCTACGTCCGGAAAACATATGGATTCAATAAGA 32145 ||| | ||| |||||||| |||| |||||||| || |||||||||| Sbjct 48 GAAGCTGATGATGGCCTACATCCGTAAAACATACGGCTTCAATAAGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132834719533992