Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq26876 107 6e-19 seq680 87.8 5e-13 >seq26876 Length=1038 Score = 107 bits (118), Expect = 6e-19 Identities = 81/95 (85%), Gaps = 3/95 (3%) Strand=Plus/Minus Query 43512 CCGGAGATCAGCACCGGTCGCCACAATCCAAACTGAGCCGTATCC---ACTGGCTATCCT 43568 ||||||||||||||||| | ||||| | |||||| |||||| || |||||||||||| Sbjct 726 CCGGAGATCAGCACCGGCCACCACATCCAAAACTGTGCCGTAGCCCTAACTGGCTATCCT 667 Query 43569 GAATTCATCAGTGATAGTTACGCTGCGGCCTTCTA 43603 | |||| |||||||||||| |||||||||||||| Sbjct 666 GCTTTCACCAGTGATAGTTATGCTGCGGCCTTCTA 632 >seq680 Length=42727 Score = 87.8 bits (96), Expect = 5e-13 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 10502 CAGGCGCTGGCTGCACAGAAAGCGGGGATTTCCGTCGGGCAGTATAAAGCCGCCATGCGT 10561 ||||| | || ||| | ||||| || ||||| ||||| ||||| || || ||||| Sbjct 1601 CAGGCCATCGCAGCAGAAAAAGCCGGTATTTCTGTCGGCCAGTACCGCGCAGCGATGCGG 1660 Query 10562 ATGCT--GCCTGCACAGTTCACCGACGTGGCCACGCAGCTTGCAGGCGGGCAAAGTCCGT 10619 ||| ||| ||| | |||||||| | | |||||||| ||||||||||| |||| Sbjct 1661 CAGCTTGGCCCGCAGA--TCACCGACATCGTAACGCAGCTGCAAGGCGGGCAAAACCCGT 1718 Query 10620 GGCTGATCCTGCTGCAACAgggggggCAGGTGAAGGACTCCTTCGGCGG 10668 ||| ||| |||| ||||| || ||| | || ||||||||||| || Sbjct 1719 TTACGATTCTGGTGCAGCAGGGCGGCCAGATCAAAGACTCCTTCGGGGG 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151133918418000