Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_019720.1 Length=44120 Score E Sequences producing significant alignments: (Bits) Value seq36678 93.3 1e-14 seq680 80.6 8e-11 >seq36678 Length=505 Score = 93.3 bits (102), Expect = 1e-14 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 34362 ATGCTGCTTGCTGTTCTTGAATGGGGTGTTGAAGACGAGGAGTTGGCGGAACTGGCTAAG 34421 ||| | || || ||||| || |||||| | |||||||| || ||||||| |||||||| Sbjct 354 ATGTTACTGGCCGTTCTGGAGTGGGGTATGGAAGACGAAGAAATGGCGGAGTTGGCTAAG 295 Query 34422 AAAGTAGCCAGAATGCTGACA---AAAGAAAAAGCCCCGAAGAACGGCGAATTCTTCGAG 34478 | || || ||| || |||||||| |||||| ||| | | | |||||| Sbjct 294 CGCCTGGCTGGATATCTGTCACCAAAAGAAAACGCCCCG--GAA-GTTGCAGCTTTCGAG 238 Query 34479 GCCTGATGTAGAAAGACTGGATCAATCCACAGGAGTAATTATGACAAA 34526 || |||| ||| ||||||||||| |||||||||||||||| |||| Sbjct 237 GCGTGATTGCGAATTACTGGATCAATTCACAGGAGTAATTATGGCAAA 190 >seq680 Length=42727 Score = 80.6 bits (88), Expect = 8e-11 Identities = 99/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 12337 TTTGACGTGGGCGGTTTTACCGGGCACGGCGGCAAGTACGAGCCAGCCGGTATCGTTCAC 12396 || || || ||||| | |||||| ||||||||||||| || || ||||| | || ||| Sbjct 3626 TTCGATGTAGGCGGGTATACCGGTGACGGCGGCAAGTATGAACCGGCCGGGGTGGTACAC 3685 Query 12397 CGCGGGGAATTCGTCTTCACCAAAGAATCAACCAGCCGCATCGGCGTGGCTAATCTCTAT 12456 || || |||||||| | | || ||| ||| ||||||||||| ||||| || || Sbjct 3686 CGTGGCGAATTCGTTATGCCGAAGGAAGACACCGCGCGCATCGGCGTCGCTAACCTGTA- 3744 Query 12457 CGC-CTGATGCGC 12468 ||| |||||||| Sbjct 3745 CGCGATGATGCGC 3757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141000749030736