Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq35391 98.7 2e-16 seq14309 86.0 1e-12 >seq35391 Length=557 Score = 98.7 bits (108), Expect = 2e-16 Identities = 103/132 (78%), Gaps = 4/132 (3%) Strand=Plus/Minus Query 20132 CTCATAATCGCTTGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAGATTTTAGCTGCTAA 20191 |||||||||||||||||| |||||||| ||| |||||||||||| ||||| ||| || Sbjct 160 CTCATAATCGCTTGGTCGTTGGTTCAAACCCAACAGGGGCCACCAAATTTTTGCTTTAAA 101 Query 20192 ATCAGCTACTTATAGCCACTCT--TCGGAGTGGCTTTTTTGTTTTCCGATTTCAAGTGGC 20249 |||| || | ||||||| | ||| |||||||||||| ||| | | | |||||| Sbjct 100 ATCATATA-AAAAAGCCACTTTTCTCGAAGTGGCTTTTTTATTTCTTGCTCAC-AGTGGC 43 Query 20250 GATGAAATGGCG 20261 | | |||||||| Sbjct 42 GGTAAAATGGCG 31 >seq14309 Length=3649 Score = 86.0 bits (94), Expect = 1e-12 Identities = 168/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 27262 TCCTGCACGGGTACGCTCAACAATCAGCTCGCGCTCCATTTCCGCCAGCGCCCCCATAAC 27321 ||| || || |||||||| || || ||||| ||||||||||| || || |||| || Sbjct 2202 TCCGGCGCGTGTACGCTCGACGATTAGCTCACGCTCCATTTCGGCGAGGCTGGCCATGAC 2143 Query 27322 ATGAAAAAAGAAGCGGCCCATTGGCGTACTGGTATCAATGCTGTCGGTCAGGCTGCGGAA 27381 || || ||||| ||||| ||||| | ||| || ||| || |||||||| ||| Sbjct 2142 GTGGAAGAAGAATCGGCCAGAAGGCGTGCCGGTGTCGATGGAATCAGTCAGGCTTTTGAA 2083 Query 27382 GTTTA-TTCCTTTTTCGCGCAGTTCCTCAGTCAGCATAACCAGATGGCGCATGCTGCGGC 27440 | | |||| || | ||||||| || ||| || || || | |||||| | Sbjct 2082 CTGGACGTCCTGCTT-GTGCAGTTCGCCAACCAGATCGACTAGTTGTTTGACGCTGCGTC 2024 Query 27441 CAAGACGATCCAGCTTCCACACCACCAGTGTGTCGCCTTCCTGCAGACAGC-GCAGTGCT 27499 | || || || |||||||| ||||| || ||||| || || |||| || | | ||||| Sbjct 2023 CCAGGCGGTCTAGCTTCCAAACCACGAGGGTGTCACCCTCTCGCAG-CATCTCCTGTGCT 1965 Query 27500 TTT 27502 ||| Sbjct 1964 TTT 1962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94441906353648