Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq9276 161 3e-35 seq35447 96.9 1e-15 seq680 80.6 8e-11 >seq9276 Length=6644 Score = 161 bits (178), Expect = 3e-35 Identities = 233/326 (71%), Gaps = 2/326 (1%) Strand=Plus/Plus Query 29220 ACTGGCACCACTTAATGGCGCCAGACTGCTGCGCGATGTGCATCAGGCCCATGTAACTGA 29279 |||| | ||||||||| | || | ||| |||| || | || ||||| || |||| Sbjct 5452 ACTGTCCCCACTTAATCGACCCGGTAGCCTGAGCGAGATGAAGAAGCCCCATATAGCTGA 5511 Query 29280 TGTCGAGGCAAATAGCCCCTTTACGCGGAACCAGGTAAGCCAGCTT-CTGAGCTGGGTTT 29338 |||||||||| | ||| | |||||||| ||||| |||||||| ||| |||||||| Sbjct 5512 TGTCGAGGCACACCATCCCATCTCGCGGAACGAGGTATGCCAGCTTACTG-GCTGGGTTC 5570 Query 29339 AGCGAAATACCGATAGCCGCAACGTTGATGATCGCGTTCTGTGTGCTGGTCTGGTTCTGG 29398 |||| || || || |||||||||||||| ||||||||||| | ||| | | | ||| | Sbjct 5571 AGCGTTATGCCAATTGCCGCAACGTTGATAATCGCGTTCTGCGCGCTTGCCGGATTCCCG 5630 Query 29399 AATGCAACTTTCGCGAGGTAGTCGTTGTTCTGAAATAGCTGGATGGCGAACTGACTTTCC 29458 | || ||||| ||| | || || ||||| || || || || |||||||| |||||| Sbjct 5631 ATCGCCGTTTTCGTCAGGAAATCATTCTTCTGGAAAAGTTGCATCGCGAACTGGCTTTCC 5690 Query 29459 TTCGCCCACACCATCCGCTCGTCAGTGGCCGCCTTAATGAAAAGCGGCTCCTGTTGTTTG 29518 |||||||| | | |||||| ||| | || | ||| ||||| ||||| Sbjct 5691 TTCGCCCATGTAACTGATTGGTCAGTCAGCGCGCCGCTAAATAACGGTTCCTGCTGTTTC 5750 Query 29519 ACGAAATCAACAAGGGTTAAGCTCAT 29544 ||||| |||| | | | |||||||| Sbjct 5751 ACGAATTCAATGATGCTGAAGCTCAT 5776 >seq35447 Length=555 Score = 96.9 bits (106), Expect = 1e-15 Identities = 140/196 (71%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 34889 GCTCCAACTCGACGGAGCGTTGCTTTTGAAAAGCGCAATTTAAAACCGTTGTGATCCTCA 34948 || || || || || || || || || || || ||||| | || ||||| || || Sbjct 523 GCGCCCACGCGCCGTAGTGTAGCCTTCGAGAATCGCAACGTGAAGCCGTT---ATAGTCT 467 Query 34949 TCGTGT-----ACTCGTCCATCACCACACGCAAACTCGATATCCTTCAGAAACGGTACTT 35003 |||| | |||| |||||||| || || | || ||||| || ||||| || |||| Sbjct 466 TCGTCTCCATAACTC--CCATCACCGCAGGCCAGTTCTATATCTTTTAGAAATGGCACTT 409 Query 35004 CCACCTCATCGTCAGGTAGGGGGGTATTTTTGTCCCAAGCGTCGACAGTTCCCCACTCAG 35063 |||||||||| || |||| || || | | ||||| ||||| ||||||||||| ||| Sbjct 408 CCACCTCATCATCGGGTAACGGTGTGCTGCTATCCCAGGCGTCTACAGTTCCCCATTCAT 349 Query 35064 ACTCTGGCGGGATGTT 35079 ||||| |||||||| Sbjct 348 TTTCTGGTGGGATGTT 333 >seq680 Length=42727 Score = 80.6 bits (88), Expect = 8e-11 Identities = 99/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 13271 TTTGACGTGGGCGGTTTTACCGGGCACGGCGGCAAGTACGAGCCAGCCGGTATCGTTCAC 13330 || || || ||||| | |||||| ||||||||||||| || || ||||| | || ||| Sbjct 3626 TTCGATGTAGGCGGGTATACCGGTGACGGCGGCAAGTATGAACCGGCCGGGGTGGTACAC 3685 Query 13331 CGCGGGGAATTCGTCTTCACCAAAGAATCAACCAGCCGCATCGGCGTGGCTAATCTCTAT 13390 || || |||||||| | | || ||| ||| ||||||||||| ||||| || || Sbjct 3686 CGTGGCGAATTCGTTATGCCGAAGGAAGACACCGCGCGCATCGGCGTCGCTAACCTGTA- 3744 Query 13391 CGC-CTGATGCGC 13402 ||| |||||||| Sbjct 3745 CGCGATGATGCGC 3757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147493909970176