Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2779 136 6e-27 seq1592 129 9e-25 seq12857 125 1e-23 seq36578 86.0 9e-12 >seq2779 Length=20704 Score = 136 bits (150), Expect = 6e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | ||||| | || || ||||| ||||| | |||||||||| ||| Sbjct 8376 AATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 8317 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||||| ||| ||||| || || |||||||| || ||||| || || Sbjct 8316 AGACACCATCGAGAACGTAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCCGATCA 8257 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | | |||| ||||||||||||||| |||||| ||||||| | || |||||||| Sbjct 8256 GCAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTATAA 8197 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 ||| || ||| || | || ||||| ||||| || Sbjct 8196 TAT-TCAAAAGGAATCTACACTTCACTTAGTTTT 8164 >seq1592 Length=29089 Score = 129 bits (142), Expect = 9e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| |||||||||||||| || ||||| || | ||| Sbjct 413 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCA 354 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || ||| ||||| ||||| ||||||||||| ||||| || || Sbjct 353 GATACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCAG 294 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| || || |||||||| || || | || || || ||||| ||| Sbjct 293 CAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAAT 234 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| || | || || |||||||| || Sbjct 233 AT-TCAAAAGGAATCCACTCTGCATTTAGTTTT 202 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | ||||| ||||| ||||| || || ||||| || || |||| ||| Sbjct 642 AATGCAGATCTTTGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCTTC 583 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || || ||| ||||| || |||||||||||||| || ||||| || Sbjct 582 AGACACGATCGAGAATGTCAAAGCGAAAATTCAGGATAAAGAAGGCATCCCCCCAGATCA 523 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||||||||| | ||| || || ||||| ||||| Sbjct 522 GCAAAGATTGATCTTTGCTGGAAAACAGCTTGAAGA 487 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | || || ||||| || ||||| |||||||| | ||| Sbjct 185 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAAGTCGAGGCATCT 126 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| ||||| ||||| ||||||||||| ||||| || || Sbjct 125 GATACGATTGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCGGATCAG 66 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| || || |||||||| || || | || || || ||||| ||| Sbjct 65 CAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAAT 6 Query 156003 AT 156004 || Sbjct 5 AT 4 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||||| |||||||||||||| || | ||||| |||| ||| Sbjct 869 ATGCAGATTTTTGTGAAGACATTAACTGGAAAAACTATAACTCTCGAAGTTGAAGCCTCT 810 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || || || || || ||||| || || || || || || Sbjct 809 GACACTATCGAGAACGTAAAGGCGAAGATTCAGGACAAAGAGGGTATTCCACCTGACCAG 750 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| ||||| || ||||| ||||| | || || || ||||| ||| Sbjct 749 CAGCGCTTGATTTTCGCCGGGAAACAGCTTGAAGACGGACGTACCTTGTCCGATTACAAT 690 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || | || || ||| | || | |||||| | ||||| Sbjct 689 ATTCAGAAGGAATCCACTCTCCATCTGGTTCTCAGATTACGTGGCGG 643 >seq12857 Length=4317 Score = 125 bits (138), Expect = 1e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| ||||||||||| || || || || || | ||| Sbjct 3816 ATGCAAATTTTCGTCAAAACTTTGACAGGAAAAACTATCACTTTGGAGGTAGAGGCTTCG 3757 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || |||||| ||||| ||||| ||||| ||||| || || Sbjct 3756 GATACGATCGAGAATGTAAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCAG 3697 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| |||||| || || ||||||||||| || | ||||| |||||||||||| Sbjct 3696 CAAAGACTGATTTTCGCGGGCAAGCAGCTCGAGGACGGACGTACTTTGTCAGATTATAAT 3637 Query 156003 AT 156004 || Sbjct 3636 AT 3635 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | || || || || || ||||| |||||||| | || Sbjct 4044 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAGACCATCACATTGGAAGTCGAGGCATCC 3985 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| ||||| || || ||||||||||| ||||| || ||| Sbjct 3984 GATACAATTGAAAATGTCAAAGCCAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCAA 3925 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| || || || || |||||| | || | || ||||| ||| Sbjct 3924 CAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACGCTTTCTGATTACAAT 3865 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || || | || || |||||||| Sbjct 3864 ATTCAGAAGGAATCTACTCTGCATTTAGT 3836 >seq36578 Length=509 Score = 86.0 bits (94), Expect = 9e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 2222 ATTTATAACATAATTTATTAAATTTTTAGATTTATCTAATGATTTCCAATGTATATATCT 2281 |||| |||||| | ||| || ||||||| | | ||| | ||||| || | | Sbjct 277 ATTTCGAACATATTCTATATAACTTTTAGAACTTTTCAATCGATACCAATCACTAAAATT 336 Query 2282 TTTACCACCTAAATTACATAATTTTGTCGCATTAAAACAACCTGtttttttATCTATTAT 2341 || || ||| | | |||||||| | ||| || ||| | ||||| |||||||| | || Sbjct 337 CTTCCCTCCTTCAGTGCATAATTTAGACGCGTTGAAAAATCCTGTGTTTTTATCGACGAT 396 Query 2342 AAGTTTAAAATCACCAAAAAGACCATAATAATAAGAATCTTTAATATGTTCATAACATAT 2401 ||||||||| |||||| | ||||||||| | || ||||| || ||||| |||| || Sbjct 397 AAGTTTAAACGGACCAAATATGCCATAATAAAACGAGTCTTTGATGTGTTCGAAACAGAT 456 Score = 86.0 bits (94), Expect = 9e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 226350 ATATGTTATGAACATATTAAAGATTCTTATTATTATGGTCTTTTTGGTGATTTTAAACTT 226409 || |||| ||||| || ||||| || | ||||||||| | |||||| ||||||||| Sbjct 456 ATCTGTTTCGAACACATCAAAGACTCGTTTTATTATGGCATATTTGGTCCGTTTAAACTT 397 Query 226410 ATAATAGATaaaaaaaCAGGTTGTTTTAATGCGACAAAATTATGTAATTTAGGTGGTAAA 226469 || | |||||||| ||||| | ||| || ||| | |||||||| | | ||| || || Sbjct 396 ATCGTCGATAAAAACACAGGATTTTTCAACGCGTCTAAATTATGCACTGAAGGAGGGAAG 337 Query 226470 AGATATATACATTGGAAATCATTAGATAAATCTAAAAATTTAATAAATTATGTTATAAAT 226529 | | || ||||| | ||| | | ||||||| || ||| | |||||| |||| Sbjct 336 AATTTTAGTGATTGGTATCGATTGAAAAGTTCTAAAAGTTATATAGAATATGTTCGAAAT 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731535302286400