Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq121 143 5e-29 seq12857 136 8e-27 seq2779 122 2e-22 seq1592 114 3e-20 seq30465 87.8 4e-12 >seq121 Length=74473 Score = 143 bits (158), Expect = 5e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 192333 ATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTG 192392 ||||| | ||| |||| ||| ||||||||||| | || ||| |||| |||| || Sbjct 8107 ATGTATACTAGTACCTTTTTGGATGTTATAATCAGAGAGAGTACGTCCATCTTCCAGCTG 8166 Query 192393 TTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 ||| ||||||||||| | || ||| ||||| ||||| ||||| |||||||| || || || Sbjct 8167 TTTTCCAGCAAAGATAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGAATCTT 8226 Query 192453 ATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 192512 ||| ||||| || | ||| || | |||||| || |||||||||||||||||||| Sbjct 8227 GGCTTTCACATTTTCGATGGTATCAGAGGCTTCTACCTCGAGAGTAATGGTTTTACCAGT 8286 Query 192513 TAATGTTTTAATAAATATCTGCAT 192536 | ||||| | || |||||||| Sbjct 8287 GAGGGTTTTGACGAAAATCTGCAT 8310 >seq12857 Length=4317 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | |||||||||||||| | || || ||||| |||||| Sbjct 4043 ATACCACCACGTAGACGAAGAACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATCA 4102 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | |||||| || |||||||| |||||||| ||||| || Sbjct 4103 GAAAGCGTGCGACCATCTTCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGA 4162 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || ||||| ||| ||||| ||| | ||| || | || Sbjct 4163 GGGATACCTTCCTTATCCTGAATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCG 4222 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||||||||| || | || || | || |||||||| Sbjct 4223 ACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4272 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| | | |||||||| | ||||| || || ||||| |||||| Sbjct 3815 ATACCACCACGAAGCCTCAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCA 3874 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | |||||| |||||||| || |||||||||||||| || Sbjct 3875 GAAAGCGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGA 3934 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || ||||| ||| ||||| || | ||| || | || Sbjct 3935 GGGATGCCTTCTTTGTCCTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCG 3994 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||| ||||| || | || || | || |||||||| Sbjct 3995 ACTTCCAATGTGATGGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4044 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||||||||| | ||| | ||||| |||| ||||| ||||||||||| || Sbjct 3590 CCGCCTCTAAGACGGAGTACAAGATGTAGTGTAGATTCTTTCTGAATATTATAATCTGAC 3649 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || ||| | || || | || || || || || || | ||| || |||||||| || Sbjct 3650 AAAGTACGTCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAGGA 3709 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || ||||| ||||| |||||| |||||||| || | ||| || | ||||| Sbjct 3710 ATGCCCTCTTTGTCTTGAATTTTAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTACC 3769 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||| || ||||| || || || ||||| | || || ||||| Sbjct 3770 TCCAAAGTGATAGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 3816 >seq2779 Length=20704 Score = 122 bits (134), Expect = 2e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 || || | ||| || || ||||| || | |||| || ||| || ||||||||||| || Sbjct 8149 CCTCCGCGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGA-ATATTATAATCGGA 8207 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| |||| |||| || ||||| ||||| || | | || ||||| || || Sbjct 8208 AAGAGTTCTGCCATCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGG 8267 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| || || ||||| |||||| || || | ||||| | ||| || Sbjct 8268 AATTCCTTCTTTGTCCTGGATTTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGAC 8327 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| |||||||||||||| || || | ||||| | ||| ||||||||| Sbjct 8328 TTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCATT 8376 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||| || | |||| |||| |||| ||||| || |||||||| | | Sbjct 8649 GATATTGTAATCGGAAAGAGTTCTGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAGGCG 8708 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||||||||| || ||||| || ||||| || || ||| ||||| ||||| Sbjct 8709 CTGCTGATCAGGTGGAATGCCTTCCTTGTCTTGAATCTTGGCTTTAACATTCTCTATAGT 8768 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || | |||||| || || || |||||||| ||||| | ||||| | || || || Sbjct 8769 GTCAGAAGCTTCTACCTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATTTG 8828 Query 192534 CAT 192536 ||| Sbjct 8829 CAT 8831 >seq1592 Length=29089 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || || || ||||| | |||||| || || || || Sbjct 412 ATACCACCACGTAGACGAAGAACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCG 471 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || | || || | ||||| ||||||||||| ||||| || ||||| || Sbjct 472 GAAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGG 531 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || ||||| ||| ||||| || | ||||| | ||| Sbjct 532 GGGATGCCTTCTTTATCCTGAATTTTCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCA 591 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | || ||||| || || || || ||||| | ||| ||||||||| Sbjct 592 ACCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACAAAGATCTGCATT 642 Score = 104 bits (114), Expect = 5e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||| || || || ||| | || || | ||||| || || || || || | | Sbjct 688 ATATTGTAATCGGACAAGGTACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGC 747 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || |||||||| || || ||||| || || || || ||||| || |||| Sbjct 748 TGCTGGTCAGGTGGAATACCCTCTTTGTCCTGAATCTTCGCCTTTACGTTCTCGATAGTG 807 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | ||| ||||| ||||| || ||||| ||||||||||| || | ||| |||||| Sbjct 808 TCAGAGGCTTCAACTTCGAGAGTTATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTGC 867 Query 192535 AT 192536 || Sbjct 868 AT 869 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| ||||| || || || ||| | || |||| || || || || || || |||||| Sbjct 4 ATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTC 63 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || || |||||||| ||||| ||||| ||| ||||| || | | Sbjct 64 TGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCAATCGTA 123 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | || ||||| | || ||||||||||| || | || || | || |||||| Sbjct 124 TCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGC 183 Query 192535 AT 192536 || Sbjct 184 AT 185 >seq30465 Length=784 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 106152 TAATTGATTATTACATCATTACACTTCATATAAAACTCTATCGAAATCCAAGAAGCTATA 106211 || |||||||| | | ||||||||| ||| ||||||||||| | ||| ||||||||| Sbjct 682 TAGTTGATTATGATACTATTACACTTATCATAGAACTCTATCGATACCCATGAAGCTATA 741 Query 106212 TCTAAAATTATTTCTTTGGGTACATACTGACCTGTAATTTGTT 106254 |||||||| | |||||| || ||||| ||| |||| |||| Sbjct 742 TCTAAAATGAGTTCTTTAGGGACATAAGTACCAGTAAACTGTT 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984015767225400