Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq12857 134 2e-26 seq121 132 9e-26 seq2779 123 5e-23 seq1592 114 2e-20 >seq12857 Length=4317 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || |||||||| || | ||| | ||||| |||| ||||| ||||||||||||||| Sbjct 3590 CCGCCTCTAAGACGGAGTACAAGATGTAGTGTAGATTCTTTCTGAATATTATAATCTGAC 3649 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| ||| |||| || | || || || || ||||| | ||| || || ||||| || Sbjct 3650 AAAGTACGTCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAGGA 3709 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || ||||| ||||| |||||| |||||||| || ||||| || | ||||| Sbjct 3710 ATGCCCTCTTTGTCTTGAATTTTAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTACC 3769 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| || ||||| || || || ||||| | ||| || ||||| Sbjct 3770 TCCAAAGTGATAGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 3816 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| | | |||||||| | ||||| || || |||||| ||||| Sbjct 3815 ATACCACCACGAAGCCTCAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCA 3874 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||| ||||||||||| ||||||||||| || || Sbjct 3875 GAAAGCGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGA 3934 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || ||||| ||| ||||| || ||||| || | || Sbjct 3935 GGGATGCCTTCTTTGTCCTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGCCTCG 3994 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||| ||||| || | || || | ||| |||||||| Sbjct 3995 ACTTCCAATGTGATGGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4044 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | |||||||||||||| | || || |||||| ||||| Sbjct 4043 ATACCACCACGTAGACGAAGAACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATCA 4102 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||| || ||||| || |||||||| || || || Sbjct 4103 GAAAGCGTGCGACCATCTTCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGA 4162 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || ||||| ||| ||||| ||| ||||| || | || Sbjct 4163 GGGATACCTTCCTTATCCTGAATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCG 4222 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||||||||| || | || || | ||| |||||||| Sbjct 4223 ACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4272 >seq121 Length=74473 Score = 132 bits (146), Expect = 9e-26 Identities = 154/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 171866 ATGTAAAGTAG--CCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAAT 171923 ||||| | ||| ||| ||| || | |||||||| || | || ||| | || |||| Sbjct 8107 ATGTATACTAGTACCTTTTTGGA--TGTTATAATCAGAGAGAGTACGTCCATCTTCCAGC 8164 Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| |||||||| || | || ||| || || ||||| ||||| |||||||| || || Sbjct 8165 TGTTTTCCAGCAAAGATAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGAATC 8224 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| ||||| || ||||| || | |||||| || |||||||||||||||||| Sbjct 8225 TTGGCTTTCACATTTTCGATGGTATCAGAGGCTTCTACCTCGAGAGTAATGGTTTTACCA 8284 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| | ||| |||||||| Sbjct 8285 GTGAGGGTTTTGACGAAAATCTGCAT 8310 >seq2779 Length=20704 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | |||||| || ||||| || | |||| || || |||||||||||| || Sbjct 8149 CCTCCGCGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAA 8208 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | || |||| || ||||| |||||||| | | || || || || || Sbjct 8209 AGAGTTCTGCCATCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGA 8268 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||||||||| || || ||||| |||||| || || || ||||| | ||| ||| Sbjct 8269 ATTCCTTCTTTGTCCTGGATTTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGACT 8328 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || |||||||||||||| || || | ||||| | || ||||||||| Sbjct 8329 TCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCATT 8376 >seq1592 Length=29089 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| || || | ||| |||| || | ||||| || || ||||| || | Sbjct 687 AATATTGTAATCGGACAAGGTACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCG 746 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||||||||| || || ||||| || || || || ||||| || ||||| Sbjct 747 CTGCTGGTCAGGTGGAATACCCTCTTTGTCCTGAATCTTCGCCTTTACGTTCTCGATAGT 806 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || | ||| ||||| ||||| || ||||| ||||||||||| || | || ||||| Sbjct 807 GTCAGAGGCTTCAACTTCGAGAGTTATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTG 866 Query 172067 CAT 172069 ||| Sbjct 867 CAT 869 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| ||||| || || | ||| |||| |||| || || || || ||||| ||||| Sbjct 3 AATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCT 62 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || || || || |||||||| ||||| ||||| ||| ||||| || || Sbjct 63 CTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCAATCGT 122 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | || ||||| | || ||||||||||| || | || || | ||| ||||| Sbjct 123 ATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTG 182 Query 172067 CAT 172069 ||| Sbjct 183 CAT 185 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || || ||||| | |||||| ||| || || || Sbjct 412 ATACCACCACGTAGACGAAGAACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCG 471 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| || | ||||| |||||||| || ||||| || || || || Sbjct 472 GAAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGG 531 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || ||||| ||| ||||| || || ||||| | ||| Sbjct 532 GGGATGCCTTCTTTATCCTGAATTTTCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCA 591 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | || ||||| || || || || ||||| | || ||||||||| Sbjct 592 ACCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACAAAGATCTGCATT 642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904719592183200