Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq838 120 9e-22 seq249 104 7e-17 >seq838 Length=39025 Score = 120 bits (132), Expect = 9e-22 Identities = 244/356 (69%), Gaps = 25/356 (7%) Strand=Plus/Minus Query 288897 TCTGTTTGTTGCTGCCAATACAACAATAGATTCGG---TTTGCTT-AAATCCATCCATAC 288952 ||| || |||||||||| || |||| |||| ||||||| |||||||||||| Sbjct 38246 TCTATTAGTTGCTGCCAT---AATAATA-ATTCCAACATTTGCTTGAAATCCATCCATTT 38191 Query 288953 TTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCG 289012 ||| | |||||| | ||||||||| ||||| || ||| | | | Sbjct 38190 CAACTAATAATTGATTCAATGTTTGTTC---------ATTTG---CTGTTGTTGCTGCTG 38143 Query 289013 AATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAAT 289072 || | | | ||| ||||||||||||||||||| ||||| ||||| | ||| |||| | Sbjct 38142 AAGCACGC---TTTCTACCAACAGCATCAATTTCATCAATAAAAATAATACAAGGAGCAC 38086 Query 289073 TTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTT 289132 | | | ||| ||| | ||||||||| | || || |||| |||||| ||| || Sbjct 38085 TCTTCTTAGCAGCGTTAAACATTTCTCTTACTCTTGAAGCACCAACTCCAACAAACACTT 38026 Query 289133 CTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCC 289191 || ||||||| | | | || | |||| | ||| | |||| ||||| || || || || Sbjct 38025 CTTCAAATTCTGCACCAGAGA-TTGAGAAGAAAGGTACACCAGCTTCACCAGCAACAGCT 37967 Query 289192 CTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 | || || | ||| || ||||||||||| || || |||| || || ||||| || Sbjct 37966 TTTGCAAGTAATGTTTTTCCTGTTCCAGGGGGACCAACTAAAAGTACACCCTTAGG 37911 >seq249 Length=60283 Score = 104 bits (114), Expect = 7e-17 Identities = 187/271 (69%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| ||| || |||||||| ||||| ||||| || | || || || || || Sbjct 42779 TTCCATAGCCTTTATCAAACGACGTTGAATGTAACCGGTCTCGGCCGTCTTCACGGCAGT 42838 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCC 302692 ||| || ||||| ||||||| |||||||| ||||| | | |||| ||| ||| || | Sbjct 42839 ATCGATAAGACCTTCACGACCGCCCATAGCGTGGAAATAGAACTCTGACGG-CGTGAGAC 42897 Query 302693 CCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAA 302752 | | | | | ||| |||| || || || || | |||||| | |||| |||| | | Sbjct 42898 CGGCGAGATACGAGTTCTCGACAAAGCCGCGGGACTCGGGTCCGTAGTCGTCCTTGATGA 42957 Query 302753 AGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCT 302812 | || || || || | || | ||| | || || || || || ||||||||||||| Sbjct 42958 AATGCGGAAGCGTTCGCTTGCGGAAACCGAAGGGTATTCGTTTACCCTCAACGTTCTGCT 43017 Query 302813 GTCCCAGGCACGAAATCATCTGCGAAATATT 302843 | |||| || | || | ||| ||||| || Sbjct 43018 GACCCACACAAGCGATAACCTGAGAAATGTT 43048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471123562570948