Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq532 255 5e-63 seq2779 113 4e-20 seq1592 107 2e-18 seq12857 95.1 1e-14 >seq532 Length=46805 Score = 255 bits (282), Expect = 5e-63 Identities = 314/429 (73%), Gaps = 0/429 (0%) Strand=Plus/Minus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 ||||||||| |||| ||| ||||||| | ||| || | | ||| || |||| Sbjct 22773 CGGCGGGTTCTTCAAGATGTAGGTGTTCAACTTGTGGTTGCTCTCTAGAAGACCATGATG 22714 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGT 34322 || || || ||||| || || |||| || ||| |||| | || || |||||||| Sbjct 22713 CCCACAGGCCTTGCAACCTTGCGAGATCGTGCCCTTCTTAGAGCTGACCATCAGCTCAGT 22654 Query 34323 CTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTC 34382 ||||| ||||| || ||||||| | ||| | || || || ||||| || |||| || Sbjct 22653 TTCCGGATTGTCGCAAGCCGGACATAGAACATATTTCCGAATAAAACCGTCCAGCAAATC 22594 Query 34383 CTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGAC 34442 || | ||| || || || ||||||||||||||||| || ||||| ||| |||| | Sbjct 22593 TTGCAGCTTCGTGGCATCATGCGAGCCGTTGACGATGAAGCGCTCGTTCTTGAAATCAAA 22534 Query 34443 CTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCC 34502 || || ||||||||||||||||| |||||||| || ||||| || |||||||||| || Sbjct 22533 TTGGGTCTGCGCGCCCAGCTCGCAACCGAAGTATTTGGTCGGATACGTGGCCGGACGACC 22474 Query 34503 AAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCC 34562 | |||||| || | || ||| |||||||| || |||||||| ||||| || || || Sbjct 22473 GATCGCCTTAGCCACGTCCACCATATTGACGATCACTGTCTTGATACCGTTTCCTTTGCC 22414 Query 34563 TTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCG 34622 || |||||||| ||| |||||||| || ||||||||||| || || |||||||| Sbjct 22413 CTCCACCTTGGCCTGGATCCGCGGCATCTTATAGCGGTAGAAGGCATCGCTGACATTGCG 22354 Query 34623 GTTAACGTT 34631 || || || Sbjct 22353 ATTGACATT 22345 >seq2779 Length=20704 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 |||||| || ||||| |||||| | || |||||||||||||| | ||| || ||| | Sbjct 8376 AATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 8317 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | |||||| || || ||||||||||| | || |||| Sbjct 8316 A-GACACCATCGAGAACGTAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCCGATC 8258 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | ||| | || |||| ||| ||||| |||||||| |||| |||||| | | ||||| | Sbjct 8257 AGCAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTATA 8198 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 | |||||||| |||||||| | ||| | || || |||| || || || Sbjct 8197 ATATTCAAAAGGAATCTACACTTCACTTAGTTTTGCGACTTCGCGGAGG 8149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 110256 TTTATAAGAGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCG 110315 ||||| ||||| | |||||||| || || |||||| | || || |||||||| ||| Sbjct 8848 TTTATTCTAGATTCATCATGCAAATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCC 8789 Query 110316 TCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAG 110375 | || || || || ||| | | | || ||| |||||| ||||| |||| Sbjct 8788 TTGAGGTAGAAGCTTCTGACACTATAGAGAATGTTAAAGCCAAGATTCAAGACAAGGAAG 8729 Query 110376 GCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAA 110435 || | || ||||| || | || || | ||| || ||||||||||| |||| ||||| Sbjct 8728 GCATTCCACCTGATCAGCAGCGCCTGATCTTTGCCGGAAAACAGCTGGAAGATGGCAGAA 8669 Query 110436 CAATGGCGGATTACAACATTCAAAAAGAATCTAC 110469 | | | |||||||| || || || ||||| || Sbjct 8668 CTCTTTCCGATTACAATATCCAGAAGGAATCCAC 8635 >seq1592 Length=29089 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| || || || ||||| ||||| | ||| ||| || Sbjct 413 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCA 354 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || ||| || ||| |||||||||||| | || |||||| Sbjct 353 GATACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCAG 294 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| ||||| || ||||||||||| | | || || | |||||||| Sbjct 293 CAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAAT 234 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| ||||| || |||| | || || |||| || || || Sbjct 233 ATTCAAAAGGAATCCACTCTGCATTTAGTTTTGCGACTTCGCGGAGG 187 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||||||||| || || || || ||||| || | || || || Sbjct 642 AATGCAGATCTTTGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCTTC 583 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | || ||| ||| ||| || ||||||||| | ||| ||||| Sbjct 582 AGACACGATCGAGAATGTCAAAGCGAAAATTCAGGATAAAGAAGGCATCCCCCCAGATCA 523 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| | || | ||| || |||||||| || || | | | || | | || ||||| Sbjct 522 GCAAAGATTGATCTTTGCTGGAAAACAGCTTGAAGACGGCCGCACGCTTTCCGACTACAA 463 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| ||||| || || |||||| |||| Sbjct 462 CATTCAGAAAGAGTCAACTTTGCACTTGGT 433 >seq12857 Length=4317 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||||||||| || || ||||| || || | || ||| || Sbjct 3816 ATGCAAATTTTCGTCAAAACTTTGACAGGAAAAACTATCACTTTGGAGGTAGAGGCTTCG 3757 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | ||||| || ||| |||||||| ||| | || ||||| Sbjct 3756 GATACGATCGAGAATGTAAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCAG 3697 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| |||| ||||| || ||||| ||||| | | || || | ||||| || Sbjct 3696 CAAAGACTGATTTTCGCGGGCAAGCAGCTCGAGGACGGACGTACTTTGTCAGATTATAAT 3637 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| ||||||||||| Sbjct 3636 ATTCAGAAAGAATCTAC 3620 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||| | ||||| || ||||| || | ||| ||| | | Sbjct 4044 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAGACCATCACATTGGAAGTCGAGGCATCC 3985 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| || ||| |||||||||||| | || ||||||| Sbjct 3984 GATACAATTGAAAATGTCAAAGCCAAAATTCAGGACAAAGAAGGCATCCCTCCGGATCAA 3925 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | |||| ||| || ||||| || || |||| | || | | |||||||| Sbjct 3924 CAGAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACGCTTTCTGATTACAAT 3865 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 ||||| || |||||||| |||| Sbjct 3864 ATTCAGAAGGAATCTACTCTGCA 3842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412656420416372