Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2779 107 1e-18 seq12857 102 5e-17 seq1592 102 5e-17 >seq2779 Length=20704 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | | | ||||||||| |||| ||| |||||||| || || || || | Sbjct 8375 TTCCTCCACGAAGACGCAGGACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATCGG 8434 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | | |||| || ||||| || || ||||| ||||| || ||||| || | | Sbjct 8435 AAAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGG 8494 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||| ||||| | ||||| || || | |||| | || || || | Sbjct 8495 GAATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATGGTATCTGAAGCTTCAA 8554 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| ||||| || || ||||| |||||||||||||||||||| Sbjct 8555 CTTCAAGGGTGATGGTTTTGCCTGTGAGAGTCTTTACAAAGATCTGCAT 8603 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| ||||| ||||| || || || | | |||| ||||| ||||| ||||| || Sbjct 8185 TCCTTTTGAATATTATAATCGGAAAGAGTTCTGCCATCTTCCAGCTGCTTACCGGCAAAA 8244 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || |||||||| || | || | || || ||||| | |||||| ||| ||| Sbjct 8245 ATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTTGTCCTGGATTTTTGCTTTTACGTTC 8304 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || || ||||| |||| || ||||| || || || || || || ||| Sbjct 8305 TCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACA 8364 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 8365 AAGATCTGCAT 8375 >seq12857 Length=4317 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||| || || || || || |||| |||| || ||||| ||||| || ||| Sbjct 4082 TCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCTTCGAGTTGTTTTCCTGCAAAG 4141 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||||| || | || | || ||||| || | ||||| |||||| Sbjct 4142 ATCAATCTCTGCTGATCCGGAGGGATACCTTCCTTATCCTGAATTTTGGCTTTGACATTC 4201 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 |||||| ||| |||||||| || | || ||||| || || ||||| ||||| || Sbjct 4202 TCTATCGTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACG 4261 Query 34967 AAGATCTGCAT 34977 || |||||||| Sbjct 4262 AAAATCTGCAT 4272 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||| || || || || || |||| |||| || ||||| ||||| || || Sbjct 3854 TCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAA 3913 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || || || || | || | || || ||||| | ||||| |||||| | Sbjct 3914 ATCAATCTCTGTTGATCCGGAGGGATGCCTTCTTTGTCCTGAATTTTGGCTTTGACATTT 3973 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || |||||||| || | || |||||||| || ||||| ||||| || Sbjct 3974 TCAATTGTATCGGATGCCTCGACTTCCAATGTGATGGTCTTACCGGTGAGAGTCTTGACG 4033 Query 34967 AAGATCTGCAT 34977 || |||||||| Sbjct 4034 AAAATCTGCAT 4044 >seq1592 Length=29089 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||||||||| ||||| || || |||| | || || || || ||||| || || Sbjct 450 CTCTTTCTGAATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCAGCAAA 509 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || |||||| ||| | || | || || || || | ||||| |||||| | Sbjct 510 GATCAATCTTTGCTGATCTGGGGGGATGCCTTCTTTATCCTGAATTTTCGCTTTGAC--A 567 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || |||| || || || || || | || |||||||||||||| | ||| || Sbjct 568 TTCTCGATCGTGTCTGAAGCTTCAACCTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTG 627 Query 34964 ACAAAGATCTGCAT 34977 |||||||||||||| Sbjct 628 ACAAAGATCTGCAT 641 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | || || || ||||| || | ||| ||||||||||| || || || | Sbjct 641 TTCCGCCACGTAATCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGG 700 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | | || | || || || || || |||||||| |||| || |||||||| | | Sbjct 701 ACAAGGTACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTG 760 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | ||||| ||||| | || || || ||| | || | ||| ||| || | Sbjct 761 GAATACCCTCTTTGTCCTGAATCTTCGCCTTTACGTTCTCGATAGTGTCAGAGGCTTCAA 820 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||||| || ||||| || | ||||| ||||| ||||||||| Sbjct 821 CTTCGAGAGTTATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTGCATG 870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325546710901676