Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_023178.1 Length=7435 Score E Sequences producing significant alignments: (Bits) Value seq8046 114 6e-22 >seq8046 Length=7925 Score = 114 bits (126), Expect = 6e-22 Identities = 217/318 (68%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 2540 ATTCTTAAGAGGAACTCCAAAGCATAATTGCATCGTTTTCTATGGGCCCCCAAATACAGG 2599 ||| |||| ||| || ||| | |||||||| || || ||||| || || ||||||| Sbjct 4125 ATTTTTAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTTTATGGACCTGCAGATACAGG 4184 Query 2600 AAAGTCAATGTTATGCATGAGCTTATTGAATGTATTAGGGGGAAAGGTTATATCGTATGC 2659 || ||| || |||||||| | ||| | | |||| || || ||||| ||||| Sbjct 4185 CAAATCATATTTCTGCATGAGTCTTTTGCAGTTCCTAGGTGGCGCTGTAATATCATATGC 4244 Query 2660 AAACAGTAGAAGCCATTTCTGGCTACAACCACTAGCTGACACTAAAATTGGTCTACTGGA 2719 || || ||||| || ||||| || || ||||||||| ||| || || |||||||| Sbjct 4245 CAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCTGACAGTAAGATAGGACTACTGGA 4304 Query 2720 CGATGCTACTAAGGC---ATGCTGGGACTATATGGACGTGTACCTCAGAAATGCACTAGA 2776 |||||| || ||| |||||| ||||| || || || || || |||||| Sbjct 4305 CGATGCGAC---GGCCCAGTGCTGGACGTATATTGATACATATCTTAGGAACCTACTAGA 4361 Query 2777 TGGAAATCCTATTAGCGTGGATTGTAAACATAGAGCCCCACAACAAATAAAATGTCCACC 2836 |||||| || | || | || | ||||||| ||| | || ||||||||||| || Sbjct 4362 TGGAAACCCCTTCAGTATAGACAGGAAACATAAGACCCTGCTGCAGATAAAATGTCCTCC 4421 Query 2837 TCTTCTAATCACAACAAA 2854 | | || ||||| || Sbjct 4422 ATTAATGATAACAACCAA 4439 Score = 96.9 bits (106), Expect = 2e-16 Identities = 223/327 (68%), Gaps = 13/327 (4%) Strand=Plus/Plus Query 6371 CAGATGTTTATGGTGGGATGCATTCCTGCAACTGGTGAGCACTGGTCTAAGG-CACAGAG 6429 ||| ||||||| ||||||||| ||| | | ||||| || ||||| |||| ||| | Sbjct 295 CAGCTGTTTATTTTGGGATGCAAGCCTCCTATAGGTGAACATTGGTCCAAGGGCACT-AC 353 Query 6430 ATGC-GCTGGTGCAGCATATGAGGCCGGTGACTGTCCTCCTATAGAGCTAACAAACAGTG 6488 ||| || ||| ||| || | |||||||||||||| | || | ||||||| Sbjct 354 CTGCAGCGGGT----CATCTGCTGTTGGTGACTGTCCTCCCCTTCAGTTTACAAACACCA 409 Query 6489 TTATTGAAGATGGGGACATGGTAGATATTGGGTTAGGTGCGCTAGACTTCAGGACGCTGC 6548 |||||| |||||||| ||||| || | ||||| || || || || || | || | Sbjct 410 CTATTGAGGATGGGGATATGGTTGAAACCGGGTTCGGGGCCCTGGATTTTGCCGCTCTAC 469 Query 6549 AGCTAAACAGATCTGATGCACCTTTGGACATTGTGAACT-CTGTGTGTAAATATCCAGAC 6607 || |||| |||||||| || |||| ||| || ||| | ||||||||||| ||| Sbjct 470 AGTCCAACAAATCTGATGTCCCCCTGGATATT-TGTACTAACATATGTAAATATCCGGAC 528 Query 6608 TATATAAAGATGGGGAAAGATCCATTTGGAGA--CGCTCtttttttCTATGCTAGGAGGG 6665 ||| | || |||| || || | ||| || | | || ||||| ||| | |||| Sbjct 529 TATCTGAAAATGGCTGCTGACCCCTATGGCGATTCTATGTTCTTTTCCCTGC--GCAGGG 586 Query 6666 AGCAGTTGTACGCTAGGCACATGTTTA 6692 ||||| ||| | | |||| | |||| Sbjct 587 AGCAGATGTTCACCCGGCATTTTTTTA 613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23666996739344