Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2779 156 3e-33 seq1592 149 5e-31 seq12857 132 4e-26 seq121 122 7e-23 seq1483 86.0 5e-12 >seq2779 Length=20704 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | |||||| |||| ||||||||||||||| || || || || ||||| | Sbjct 8376 TCCTCCACGAAGACGCAGGACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATCGGA 8435 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || |||||||||||||| | |||| | ||||||||||| || Sbjct 8436 AAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGG 8495 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| ||||||||||| || | ||| || ||| |||||| || || ||| ||| || Sbjct 8496 AATTCCCTCTTTGTCCTGGATTTTGGCCTTCACATTTTCTATGGTATCTGAAGCTTCAAC 8555 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||| || || |||||||| || | || || ||||| ||||||||| Sbjct 8556 TTCAAGGGTGATGGTTTTGCCTGTGAGAGTCTTTACAAAGATCTGCATT 8604 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || || ||||| || ||||| |||||||| |||||||| | || || | | Sbjct 8161 CGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAAAGAGTTCTGCCA 8220 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | || | | ||||||||| || ||||| || |||||| Sbjct 8221 TCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTTG 8280 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | |||| ||| || | || | ||||| ||| ||| ||||||||||| || Sbjct 8281 TCCTGGATTTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAATG 8340 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||||| || | ||||| ||||| ||||||||| Sbjct 8341 GTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCATT 8376 >seq1592 Length=29089 Score = 149 bits (164), Expect = 5e-31 Identities = 164/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| || ||||| || |||||||| |||||||| || ||||| | | |||||| Sbjct 199 CGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGACAAGGTGCGTCCG 258 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| || | |||||||| ||||||||||| || || || |||||| Sbjct 259 TCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTG 318 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| |||||| | ||||||| | || | || || ||| |||||||| | ||| || Sbjct 319 TCTTG-AATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTACTTCCAAAGTAAT 377 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || || |||||||| || || || ||||| Sbjct 378 AGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 Score = 138 bits (152), Expect = 9e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || |||| ||| || |||||||| || ||||| || ||||| | | ||| || || Sbjct 658 AGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGACAAGGTACGTCCGTCT 717 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || ||||| || || | ||||| | ||||| || || ||||||||||||||||| Sbjct 718 TCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTGGAATACCCTCTTTGTCC 777 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | || || | || | ||||||||| ||| ||||| ||||||||||| Sbjct 778 TG-AATCTTCGCCTTTACGTTCTCGATAGTGTCAGAGGCTTCAACTTCGAGAGTTATAGT 836 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| || || ||||| |||||||| Sbjct 837 TTTTCCAGTTAATGTCTTCACAAAAATCTGCAT 869 Score = 134 bits (148), Expect = 1e-26 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || | || || ||||| |||||||| || || | || ||||| Sbjct 426 ACGAAGAACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGGAAAGCGTGCGGCC 485 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || ||||| |||||| | ||||||||||||||||| || || || || ||||| Sbjct 486 GTCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGGGGATGCCTTCTTT 545 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || |||||| | ||||||| | || | ||||| ||| ||| || || | || | Sbjct 546 ATCCTG-AATTTTCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCAACCTCCAATGTGA 604 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || || || || |||||||| ||||| ||||||||| Sbjct 605 TGGTCTTTCCCGTCAAGGTTTTGACAAAGATCTGCATT 642 Score = 104 bits (114), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 29602 TGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAAT 29661 ||||| || ||||| | | |||||| || || || || ||||| || | |||||| Sbjct 1 TGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAAT 60 Query 29662 CTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTAC 29720 || ||||||||||| ||||| || ||||||||||| |||||| | ||||||| | || | Sbjct 61 CTCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTG-AATTTTGGCTTTGACATTCTCAAT 119 Query 29721 AGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATAT 29780 || ||||| || ||||| | || || ||||| || || | || || || || || Sbjct 120 CGTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAAT 179 Query 29781 CTGCAT 29786 |||||| Sbjct 180 CTGCAT 185 >seq12857 Length=4317 Score = 132 bits (146), Expect = 4e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || ||||| | || ||||| || ||||| || ||||| | || |||||| Sbjct 4057 ACGAAGAACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACC 4116 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||||||||| || ||| | |||||||| ||||||||||| || ||||| || || Sbjct 4117 ATCTTCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAGGGATACCTTCCTT 4176 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || |||||| | ||||||| | |||| || ||||| || ||||| | || | Sbjct 4177 ATCCTG-AATTTTGGCTTTGACATTCTCTATCGTATCAGATGCCTCGACTTCCAATGTGA 4235 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || | || || || || |||||||| Sbjct 4236 TGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4272 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || || | ||| || || | ||| || || |||||||| ||||| |||||||| | Sbjct 3589 TCCGCCTCTAAGACGGAGTACAAGATGTAGTGTAGATTCTTTCTGAATATTATAATCTGA 3648 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || || ||||| || ||||| || | |||| |||||||||||| || || Sbjct 3649 CAAAGTACGTCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAGG 3708 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| |||||||||||||| |||||| | || ||| | || | || || ||| |||| Sbjct 3709 AATGCCCTCTTTGTCTTG-AATTTTAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTA 3767 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || | ||| |||||||| || || || ||||| || || || ||||| Sbjct 3768 CCTCCAAAGTGATAGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 3816 >seq121 Length=74473 Score = 122 bits (134), Expect = 7e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 ||||||| ||||||||||| | | || || ||| || || ||||| |||||| | | Sbjct 8121 CTTTTTGGATGTTATAATCAGAGAGAGTACGTCCATCTTCCAGCTGTTTTCCAGCAAAGA 8180 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTT 29715 | | || |||||||| || ||||| |||||||| || || ||| || | ||| ||| || Sbjct 8181 TAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTG-AATCTTGGCTTTCACATTT 8239 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | || ||||| |||||| || ||||| || ||||| ||||| | |||||| || Sbjct 8240 TCGATGGTATCAGAGGCTTCTACCTCGAGAGTAATGGTTTTACCAGTGAGGGTTTTGACG 8299 Query 29776 AATATCTGCAT 29786 || |||||||| Sbjct 8300 AAAATCTGCAT 8310 >seq1483 Length=30179 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| ||||| ||||| || | || |||||||| ||||| || || || | Sbjct 23249 CCACCTCGCAAGCGCAGTACCAAGTGCAAGGTAGATTCTTTCTGAATATTGTAGTCGGAT 23308 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | ||| || | ||| ||||||||| | ||||||||||||||||| |||||| Sbjct 23309 AAAGTCCTACCATCTTCCAATTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGCGGA 23368 Query 29680 ATACC 29684 || || Sbjct 23369 ATTCC 23373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385046410409364