Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_023496.1 Length=7596 Score E Sequences producing significant alignments: (Bits) Value seq8046 250 1e-62 >seq8046 Length=7925 Score = 250 bits (276), Expect = 1e-62 Identities = 847/1298 (65%), Gaps = 26/1298 (2%) Strand=Plus/Plus Query 1612 ATGTTAATAGAGCCCCCTAAATTGAAAAGCATGCCTGCAGCACTGTATTGGTTTAAGACA 1671 ||| | ||||| || || ||| | | ||| | ||||| || |||| |||| |||||| Sbjct 3652 ATGCTCATAGAACCACCAAAACTAAGAAGTACACCTGCTGCCTTGTACTGGTACAAGACA 3711 Query 1672 AGCATGTCAAATGTGTCAGAAGTGTTTGGGGAGCCACCAGACTGGCTGAAGCGGCAAACA 1731 |||| |||| | || || | ||||||| ||||||| ||| | | | || ||| Sbjct 3712 TCCATGGGTAATGGGAGTGAGGTCTATGGGGAGACACCAGAATGGATAGTGAGACAGACA 3771 Query 1732 CAGTTAAACCATTGTTTTGAGGATGATACTTTTAATTTGTCGCACATGGTACAGTGGGCA 1791 | | || || || | |||||||| || || || || |||||| |||| ||| Sbjct 3772 CTGATAGGACACAGTATGGAGGATGAGCAGTTCAAATTATCTGTCATGGTGCAGTACGCA 3831 Query 1792 TATGACAATAAGTACACAGATGATAGCACAATAGCATATGAGTACGCATGTATAGGCGAC 1851 |||||| || | || || || ||| || | |||| |||||||||| | | ||| Sbjct 3832 TATGACCATGACATAACGGACGAGAGCGCACTGGCATTTGAGTACGCACAGCTGGCGGAC 3891 Query 1852 ACAGACAGTAATGCAGCAGCATTCTTGAAAAGCAACTGCCAAGCTAAGTATGTGAAAGAC 1911 ||| ||||| |||||||| | || ||||||||||| || ||||| | |||||| Sbjct 3892 GTGGACGCCAATGCGGCAGCATTTCTAAACAGCAACTGCCAGGCCAAGTACCTAAAAGAC 3951 Query 1912 TGTGGAGTAATGGTACGG-CATTACTTAAGGGCAGAAATGAGGAAAATGTCTATGGCAGA 1970 | || | | || | | || ||| | ||||| | | ||||| |||| | Sbjct 3952 -GCGGTGACAATGTGCAGACACTACAAGCGTGCAGAGAGGGAACAAATGAGTATGAGCCA 4010 Query 1971 GTGGATAGAGCACTGCAGCAGCAAAGTAGAGGAAGATGGGGACTGGCGAACAATAGTCAG 2030 |||||| | | | ||||| || || || || || ||| | ||||| | Sbjct 4011 GTGGATCAAATTTAGAGGGAGCAAGATATCAGAGGAAGGAGATTGGAAGCCTATAGTAAA 4070 Query 2031 GTTTCTAAGATATCAAGGAATAGAGTTTGTGAGCTTC--TGCAGGGCACTGAAAGATTTT 2088 |||| |||| |||| || ||||||| ||| ||| ||| | | | || ||| Sbjct 4071 GTTTTTAAGGCATCAGGGGGTAGAGTTCGTGTCATTCCTTGCTG--CCTTTAAGTCATTT 4128 Query 2089 TTAAAAGGCGTACCAAAAAGAAACTGCATAGTACTGTGTGGCCCACCAAACACAGGAAAG 2148 |||||||| || || || | || |||||||| | | ||| || || | ||||| || Sbjct 4129 TTAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTTTATGGACCTGCAGATACAGGCAAA 4188 Query 2149 TCATGGTTTGGGATGAGCTTGATGACATTTTTACAAGGCAAGGTTCTCTCATATTGCAAT 2208 |||| || | ||||| | || || || ||| || | |||||| |||| Sbjct 4189 TCATATTTCTGCATGAGTCTTTTGCAGTTCCTAGGTGGCGCTGTAATATCATATGCCAAT 4248 Query 2209 GCAGCGAGCCACTTTTGGCTGCAACCGTTAGGGGACACAAAAATAGCTATGATAGATGAT 2268 | ||||||||||||||||| || |||| |||| || |||| | | || ||| Sbjct 4249 TCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCTGACAGTAAGATAGGACTACTGGACGAT 4308 Query 2269 GCAACACCACAGTGCTGGGACTACATGGACACATACATGAGAAATGCATTAGACGGGAAC 2328 || || | ||||||||| || || || ||||| | || || | |||| || ||| Sbjct 4309 GCGACGGCCCAGTGCTGGACGTATATTGATACATATCTTAGGAACCTACTAGATGGAAAC 4368 Query 2329 CCTATATGTGTAGATAGGAAACACAAGGAACCTAC-ACAGATAAAATGTCCACCACTATT 2387 || | || |||| |||||||| || || ||| | |||||||||||||| ||| || | Sbjct 4369 CCCTTCAGTATAGACAGGAAACATAA-GACCCTGCTGCAGATAAAATGTCCTCCATTAAT 4427 Query 2388 GATCACATCAAACACAAACATAAAAGAGAACGACAGGTGGCGCTACTTGTGGAGCAGACA 2447 ||| ||| | |||| ||| |||| | ||||| ||| || ||| | |||||| Sbjct 4428 GATAACAACCAACATAAATCCTCTAGAGGAGGACAGATGGAAGTATTTGCGCAGCAGAGT 4487 Query 2448 CACTATGTTTATGTTTCCAAATGAAATGCCATT---TACCCCACAGGGAACACCAGTGTA 2504 || |||||| |||| | || | | || || | |||| |||| | || || Sbjct 4488 AACACTGTTTAAGTTTACCAACCCATTTCCCTTCGCAAGCCCA-GGGGAGCCCC----TA 4542 Query 2505 TGAGCTTT--CTAATGCAAACTGGAAGTCATTTTTTGGACGGTCCTGGGCACAGTTAGAC 2562 | || | ||||||||||||||| | ||||| | |||| ||| | | ||||| Sbjct 4543 TACCCTATAAATAATGCAAACTGGAAATGCTTTTTCCAAAGGTCGTGGTCCCGCCTAGAC 4602 Query 2563 CTTGGCGACCGGGAGGACGTGCAGGACAATGGAAGGGCTAACCAGCCGTTTAGATGCGTT 2622 || | | ||||| | | |||||||||| || | |||||||||||||||| Sbjct 4603 CTAAACAGTCCAGAGGATCAGGAAGACAATGGAAACACTGGCGAGCCGTTTAGATGCGTG 4662 Query 2623 GCAGGAACAGCTGATAG-ACTGCTATGAGGCAGACAGCAA-AAACTTGGAAGACCACATA 2680 ||||| | || ||| |||| ||||| ||| ||||| |||||| || ||||| || Sbjct 4663 CCAGGAGACGTTGCTAGAACTG-TATGAAAAAGATAGCAACAAACTT-GAGGACCAAATT 4720 Query 2681 CATCACTGGTCACTGCTGCGAAAAGAAAATG-CATATATGTACAGGGCACGGCAGCTAGG 2739 | || ||| | | | | || |||||||| ||| | ||| | ||| ||| | || Sbjct 4721 AAACATTGGGCGCAGGTCCGGCTAGAAAATGTCATGT-TGTTTAAGGCTCGGGAATGTGG 4779 Query 2740 CATGCATAAAGTAGG-GCTACAAATAGTGCCTCCTCTGGCAGTGTCACAACAAAAAGCAC 2798 ||| ||| || ||| || |||||| | || | ||||| || ||||| Sbjct 4780 AATGACACGAGTCGGCTGTAC-AACAGTGCCCGCCCTCACCGTGTCGAAAGCTAAAGCTT 4838 Query 2799 ATCAAGCTATTGAGATGCATTTAGCATTGCAAAGCTTGAATAAGTCACAATACAGAACTG 2858 ||| || || ||| |||| | ||||| || | |||| || ||| || || | Sbjct 4839 GTCAGGCCATAGAGGTGCAGCTGGCATTACAGACATTGATGCAGAGTGCATATAGCACGG 4898 Query 2859 AGGACTGGACACTGACAGACACTAGCCAGGAGATGTGG 2896 ||| ||||| ||| |||||| ||| |||||||||| Sbjct 4899 AGGCATGGACCCTGCGAGACACGTGCCTGGAGATGTGG 4936 Score = 237 bits (262), Expect = 8e-59 Identities = 633/960 (66%), Gaps = 22/960 (2%) Strand=Plus/Plus Query 5600 CTGTGCCTATGGTGTCTGGTAATCAATACAGGGTGTTTCGCGTTGCCCTGCCAGATCCTA 5659 |||| || | ||| || || | || ||| | ||||| | || ||||| || || | Sbjct 20 CTGTACCCAAGGTATCGGGCTACCAGTACCGTGTGTTCCATGTAAAGCTGCCGGACCCCA 79 Query 5660 ATAAGTTTGGCCTCCCTGACACGTCACTGTATAATCCAGATAAACAACGTTTAGTATGGG 5719 |||||||||| || ||||| | || ||| |||| || | || ||| | | |||| Sbjct 80 ATAAGTTTGGTCTGCCTGATGCCAACCTCTATGATCCCGACACCCAGCGTCTGCTGTGGG 139 Query 5720 CTTGCGTAGGCCTTGAAGTAGGCCGTGGGCAGCCCCTAGGCATAGGCCTCAGTGGTAATC 5779 | || || || |||| || || ||||| ||||| || || | || | ||| | | Sbjct 140 CCTGTGTCGGAGTTGAGGTGGGTCGTGGCCAGCCTCTGGGTGTGGGGATATCCGGTCACC 199 Query 5780 CTCTTTTTAATAAGCTTGAAGACACTGAAAATCCTGGGCGTTACTTAACTACAGCTAGTA 5839 || | ||| | || || || ||||||||| | | | || |||||| | Sbjct 200 CTTACTATAACAGACTGGATGATACTGAAAATGCACACAATCCCG--AC-ACAGCTGAT- 255 Query 5840 CAGACAACAGACAGAATGTAGCTATAGATAATAAACAAACACAACTGTGTATCATTGGCT 5899 || || ||||| || | || ||| ||||||| ||||| |||| ||| | || | Sbjct 256 --GATGGGAGGGAGAATATATCCATGGATTATAAACAGACACAGCTGTTTATTTTGGGAT 313 Query 5900 GCACACCTCCTGTAGGTGAACACTGGGGGAAAGGCAATCCGTGCGACAATGTCA-CTACT 5958 ||| |||||| |||||||||| ||| || |||| | | ||| | |||| || || Sbjct 314 GCAAGCCTCCTATAGGTGAACATTGGTCCAAGGGCACTACCTGCAGCGG-GTCATCTGCT 372 Query 5959 AAGGATGGTGACTGCCCTGCTCTTGAGCTTGTTAATTCTGTTATTCAGGACGGTGATATG 6018 | ||||||||| ||| | ||| || || || | |||| |||| || |||||| Sbjct 373 ---GTTGGTGACTGTCCTCCCCTTCAGTTTACAAACACCACTATTGAGGATGGGGATATG 429 Query 6019 ATTGATACTGGCTTTGGTGCTATGGATTTTAAAACTCTACAGACTACTAAGTCTGATGTT 6078 |||| || || || || || |||||||| |||||||| | | || |||||||| Sbjct 430 GTTGAAACCGGGTTCGGGGCCCTGGATTTTGCCGCTCTACAGTCCAACAAATCTGATGTC 489 Query 6079 CCGTTAGATATTTCTAATACAGTTTGCAAGTATCCTGATTACTTGAAAATGGCGTCTGAG 6138 || | ||||||| || || | || || ||||| || || |||||||||| |||| Sbjct 490 CCCCTGGATATTTGTACTAACATATGTAAATATCCGGACTATCTGAAAATGGCTGCTGAC 549 Query 6139 GTTTATGGCGACTCCCTGTTCTTTTACTTGAGGCGTGAACAGCTGTTTGCACGCCATTTT 6198 |||||||| || ||||||||| | || | | || ||| |||| | || |||||| Sbjct 550 CCCTATGGCGATTCTATGTTCTTTTCCCTGCGCAGGGAGCAGATGTTCACCCGGCATTTT 609 Query 6199 TTCAGCCGCGCAGGTGTTG-TAGGTGACACAGTACCTGCTGAAATGTATGTAGCAGGTAC 6257 || | || | || || | | |||||| | | || | || | ||||| | || | Sbjct 610 TTTAATCGGGGTGG-GTCGATGGGTGACGCCCTCCCGGAGGAGCTATATGTCAAAAGTTC 668 Query 6258 TACTGGTCAGAACCAAGCTACAATTGCTTCCTCCGTTTATGTGCCTACCCCTAGCGGGTC 6317 ||| | |||| || | || || || | || | || || || || || Sbjct 669 TACCGTCCAGACCCCCGGTAGTTATGTTTACACCT---------CCACTCCCAGTGGCTC 719 Query 6318 TATGGTAACTTCTGAAGCTCAGCTGTTTAACAAGCCGTACTGGCTGCAGCGTGCACAAGG 6377 ||||||| | |||||| ||| | ||||||||||| |||||||||| | || || || Sbjct 720 TATGGTATCCTCTGAACAGCAGTTATTTAACAAGCCTTACTGGCTGCGAAGGGCCCAGGG 779 Query 6378 CCACAACAATGGCATCTGCTGGGAGAATCAGCTGTTTGTTACTGTTGTCGATACCACTCG 6437 || ||||||||||| ||||||| |||| | | || | || || || || ||||| || Sbjct 780 ACATAACAATGGCATGTGCTGGGGCAATCGGGTCTTCCTGACAGTGGTGGACACCACGCG 839 Query 6438 CAGCACTAACATGACATTGTCTGCTACAGCTAAGACAGAAACATCCTACAAAGCTGAGAA 6497 |||||| || | | |||| ||| || | || |||||||| || || || || Sbjct 840 CAGCACAAATGTCTCTTTGTGTGCCACTGTAAACACAGAAACTAATTATAAGGCCTCCAA 899 Query 6498 CTTCAAGCAGTATATGCGGCACTGTGAAGAGTATGACCTGCAATTTATTTTCCAGCTTTG 6557 | ||| | || | |||| || |||||||| |||| || ||||| || || || Sbjct 900 TTATAAGGAATACCTTAGGCATATGGAGGAGTATGATTTGCAGTTCATTTTTCAACTGTG 959 Score = 129 bits (142), Expect = 3e-26 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 5388 AAACGCCGCAAACGTGTCTCTTAtttttttGCAGATGGGGTTGTGGCTGCCTAGTGAAAA 5447 ||||| || |||||||| ||||| ||||||||||| |||||| ||||| ||||| Sbjct 7653 AAACGACGTAAACGTGTGCACTATTTCTTTGCAGATGGCTATGTGGCGGCCTAATGAAAG 7712 Query 5448 CAAGCTTTACCTGCCTCCTACATCAGTGTCTAGAGTTGTCAGCACTGATGAATATGTCAC 5507 |||| | ||||||||||| ||| | || || | || |||| || |||| |||||||| Sbjct 7713 CAAGGTATACCTGCCTCCAACACCTGTCTCAAAGGTGCTCAGTACGGATGTCTATGTCAC 7772 Query 5508 CAGGACTAGTTTGTTTTATTATGCTGGCACCTCTAGGTTGCTTGCTGTAGGCCATCCTTA 5567 |||| | | | | |||| ||| ||| | ||||||| | || | ||||||||||| || Sbjct 7773 GCGGACGAATGTTTATTATCATGGTGGGAGCTCTAGGCTCCTCACAGTAGGCCATCCATA 7832 Query 5568 TTTCCCTGTGAAGAAA 5583 || || | |||||| Sbjct 7833 TTATTCTATAAAGAAA 7848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24181983423360