Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_023555.1 Length=43017 Score E Sequences producing significant alignments: (Bits) Value seq680 179 1e-40 >seq680 Length=42727 Score = 179 bits (198), Expect = 1e-40 Identities = 436/659 (66%), Gaps = 21/659 (3%) Strand=Plus/Plus Query 32751 TGCCGCACCAGCGCGGCCTGATCAACGATACGACGACCAAAATACTAGGCCTGTGCTCGG 32810 ||||||||||| || ||| | | || | ||||| ||||| || ||||||||||||| Sbjct 33339 TGCCGCACCAGTTCGACCTACTGGAAGACATCACGACGAAAATTCTCGGCCTGTGCTCGG 33398 Query 32811 GCTTCGGTGGCGGTAAAACATGGTCGGCAGCACGCAAGGCGGTACAACTCGCGATCCTGA 32870 ||| || ||||||||||| ||| || | || || ||| | || || ||| ||| Sbjct 33399 GCTATGGCGGCGGTAAAACTTGGGTCGCGGTGCGTAAAGCGATCCAGCTGATGATTTTGA 33458 Query 32871 ATCCAGGTTGCGATGGCATTATCACCGAGCCGACAATACCGCTACTCGTCAAGATCATGT 32930 |||| || ||||| || || || ||||| ||||| || || | || | | | Sbjct 33459 ATCCGGGGTGCGACGGTATGATTACCGAACCGACGCACCCACTGTTAACGCAGGTGCTTT 33518 Query 32931 ATCCGGAGCTGGAGAAGGCGTTAAACGAAGCTGGGATAAAATGGAAGTTCAACAAGCAGG 32990 |||| || || || | |||| | | || || || || ||||| |||||| || Sbjct 33519 ATCCCGAACTTGAAACGGCGCTTGATGAGTACGGCATTCGATACAAGTTTAACAAGGTGG 33578 Query 32991 ATAAGATCTACCATTGCCGTATTGCGGGGCAGATGAC---GCGCA--------------- 33032 | ||||| | ||| | || || ||| | ||||| Sbjct 33579 AGAAGATTTTTACGTGCTGGGTTTGGGATGAGAAAATCCAGCGCAACCGCCGCACACGTA 33638 Query 33033 TTATCTGCGACTCGATGGAGAACTACACCCGCCTGATCGGTGTTAACGCCGCCTGGTGCG 33092 | ||||| | |||||||| ||||| | ||| | |||||||||||||||| ||||| | Sbjct 33639 TCATCTGTGCATCGATGGAAAACTATAAACGCTTAGTCGGTGTTAACGCCGCGTGGTGTG 33698 Query 33093 TGTGCGACGAGTTCGATACTACCAAGCCAGATATTGCGATGGA-GGCATACCGCAAACTG 33151 || ||||||||||| || | | || | || || | ||| | | |||||| Sbjct 33699 TGATGGACGAGTTCGACACCTCGGCGGAGGACGTCGC-ATATATGGCGTTCGTGAAACTG 33757 Query 33152 CTGGGGCGTTTGCGTACTGGTAATGTCCGCCAGATGGTGATCGTGTCCACTCCGGAAGGA 33211 ||||| ||| ||||| ||||| || ||||||||| | || |||||||| || ||||| Sbjct 33758 CTGGGTCGTCTGCGTCGCGGTAAAGTGCGCCAGATGATTATTGTGTCCACACCTGAAGGT 33817 Query 33212 TTCCGGGCGATGTATCAGATCTTCATATCGGAAGCGGACGACCAGAAGCGCCTGATCAAG 33271 ||||| |||||||| | |||||| | | || |||||| |||||| || ||||| Sbjct 33818 TTCCGCGCGATGTACCGCATCTTCGTCACTGAGTTGGACGAGATGAAGCGGCTTATCAAA 33877 Query 33272 GCCCGCACCACTGATAATCACTATTTGCCGCAGGACTACATCGACACGCTGCGGGCGCAA 33331 || || || || | || ||||| | ||||| ||| | ||||| ||| Sbjct 33878 GCGAAGACGCGCGACAACCCGCATCTGCCGGAAGACTATATCAAGACGCTCGAAAAACAA 33937 Query 33332 TATCCACCTGAGCTCATCGAGGCTTACCTAAACGGTGAATTCGTCAACCTGACCGGCGG 33390 || | ||| | | ||||| ||||||||||| || ||||||||| ||| |||||| Sbjct 33938 TACTCGAAAGAGTTGGTAGAGGCGTACCTAAACGGCGAGTTCGTCAACATGA-CGGCGG 33995 Score = 111 bits (122), Expect = 4e-20 Identities = 203/297 (68%), Gaps = 3/297 (1%) Strand=Plus/Plus Query 15767 CGGGAAGCGTTTTAGCAGGCGCACCAGGTCGTGTTTATACTGGTACGCGACTAGCAACGG 15826 |||||| |||||| |||| || | || |||||||| | |||||||| || | | ||| Sbjct 14262 CGGGAACCGTTTTTGCAGCCGGGCTAGATCGTGTTTCCAGTGGTACGCCACGATAACCGG 14321 Query 15827 GCTGCCGTTTAGCTCCTCGATGATGGATTCCAGCGCGTCGAGCTTGGCCTTGTGGATTTC 15886 |||| | | ||| ||||| || || || || |||| ||||| || || || | || Sbjct 14322 CGCGCCGCTCAACTCTTCGATTATCGACTCGAGTTCGTCCAGCTTCGCTTTATGCACCTC 14381 Query 15887 CGTCCACTCTTTGGATGCCTCGCCATCGTCGGTCGTGATGTAACAGGCGCCGCCCGCGAT 15946 |||||| | | | |||||| || |||||| | ||| || ||| | || | Sbjct 14382 TTCCCACTCCGTTGTTTGCTCGCCGTCTTCGGTC---AGGTACACCGCCCCGGCGGCCAG 14438 Query 15947 CTGTAAACACTTGGCCGTTTTTGCCGCCGCGTTCGAGGCCTCGATTTCGCCGCTTTCCAA 16006 ||| || ||| ||| ||| ||||| |||| || |||||||||||| ||||| Sbjct 14439 CTGCAACAGCTTACCCGATTTAGCCGCGCTGTTCAGCGCTTCGATTTCGCCGTCTTCCAG 14498 Query 16007 TTCAGCGAAAAGCGCGTTTTCCATATCGTCGTAGATCTTGCGCGCTTTCTTCGGCAA 16063 | |||||||| | ||||| | ||| ||| ||||| || ||||||||||| Sbjct 14499 CTTAGCGAAAAATTGTTGCTCCATTTTGTCATAGGCTTTGCGGGCCTTCTTCGGCAA 14555 Score = 96.9 bits (106), Expect = 1e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 19406 GCCAGACCGCGACCCTCGACGTTAGAGTAGTCGGCAACGACCAATTTTTTACCCGGTGCC 19465 ||||| ||||| ||||||| ||| || ||||||||||||| | |||||||||||| | | Sbjct 19384 GCCAGCCCGCGCCCCTCGATGTTCGACAAGTCGGCAACGACGAGTTTTTTACCCGGCGTC 19443 Query 19466 GGGATGATGCAGCCGCGAACCGTGGA 19491 ||||||||||||||||| | || ||| Sbjct 19444 GGGATGATGCAGCCGCGCAGCGCGGA 19469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137472691633592