Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq237 210 2e-48 seq1817 131 1e-24 seq233 109 4e-18 seq2796 98.7 7e-15 >seq237 Length=61101 Score = 210 bits (232), Expect = 2e-48 Identities = 727/1114 (65%), Gaps = 20/1114 (2%) Strand=Plus/Minus Query 281434 ATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTG 281493 ||||| ||||||| || || | |||||| || ||||||||||| || || || || | Sbjct 37610 ATTAAACTTACCATTCGCGTCGATATCAAAAGTAACTTCAATTTGCGGTACACCCCTAGG 37551 Query 281494 AGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTT 281553 || ||||| || | || | ||| | || || | || ||||| || || | Sbjct 37550 TGCCGGTGGTATTGCAGTTAACTCGAATTTGCCGAGGATGTTGTTATCCTTCGTCATCGC 37491 Query 281554 TCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAA 281613 || || || ||| | | ||||||| ||| | | ||||||||| ||||| || || || Sbjct 37490 TCTCTCTCCTTCGTAGACTTGGATAAGTACTCCCGGTTGATTATCGGAATACGTGGTGAA 37431 Query 281614 TACTCTGGAT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATAC 281672 ||||| | | || || || || ||||| || | || | | |||||| | || Sbjct 37430 -CGTCTGGGTCTGCTTCGTTGGTATCGTCGTGTTCCTCTTGATCAAAGAGGTCATGACAC 37372 Query 281673 CACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA 281732 | ||||| ||||| | ||| | || | ||||| || || | || | | || ||||| Sbjct 37371 CGCCAGCGGTTTCAATACCCAATGACAACGGAGTCACGTCCAGCAGAAGTAGATCTTGAA 37312 Query 281733 GTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAG 281792 || || | | ||| | |||||| || |||| || || || || ||||| | Sbjct 37311 CTTCCTCGGACTTGTCACCGTGCAAAATAGCCGCCTGAACTGCTGCGCCGTAAGCAACGG 37252 Query 281793 CTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGT 281851 | ||||| ||||||| | || ||| || | || || ||||| |||| ||||| || | Sbjct 37251 CCTCATCCGGATTAATGGATTTATTCAGCTCCTTGCCGTTGAAGAAATCTTGAAGTAACT 37192 Query 281852 TGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911 | | | ||| || || | | || || || |||| || || || || || | Sbjct 37191 TCT-GAATCTTTGGTATCCTGGTGGAGCCACCGACTAGAACTATACTGTGAACTTGAGCC 37133 Query 281912 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAG 281971 || |||| || | || | |||| || ||||||||||| | |||||||| Sbjct 37132 TTGTCCATCTTCGCGTCTCTAAGTGCTTTCTCGACGGGTTCAAGGGTACTTCTAAACATA 37073 Query 281972 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TA-TAATCAATTCCTT 282029 || | || ||||| |||||| | || || || || ||| | || ||||||| || | Sbjct 37072 TCGGCGCAGAGTTCCTCGAATCTGGCCCTGGT--GATCGACGTGTAGAAATCAATACCCT 37015 Query 282030 CGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC 282089 ||||||| ||||||| ||||| | | ||| || || || | | | || || | Sbjct 37014 CGAACAACGAATCAATCTCAATGCTCGCTTGCGTAGACGAGCTCAACGTTCTCTTCGCTC 36955 Query 282090 GTTCACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTGCTGATTGATTCAAATCTGTTTT 282147 ||| || |||||||| || | || | || || ||| | | || ||||||| | || Sbjct 36954 TTTCGCAGGCTGTCCTCAGACGTCTCAGAGATCTCTTG-TTAGTG-CTCAAATCCTTCTT 36897 Query 282148 ATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACC 282207 ||||| |||||||| |||| || | | || | ||||| || || || || || Sbjct 36896 GTATTTCCTCTTGAATTCTTGCACGAAGTGATTCACCATTCGATTGTCGAAGTCCTCGCC 36837 Query 282208 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAA 282267 || | | || | || | |||| | | || | ||| | || || || | | || Sbjct 36836 ACCGAGATGCGTGTCGCCGGCTGTAGATTTCACCTCGAAGATGCCGTCCTCGATTGTCAG 36777 Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 282327 || | || || ||| ||||| |||| ||| || || || || ||| |||| | | Sbjct 36776 AATTGATACGTCGAAGGTACCACCGCCCAAATCGAAGATCAGGACGTTCTTTTC---GCC 36720 Query 282328 T-TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCT 282384 | ||| || ||||| || || ||||| | || || || || || || || || || || Sbjct 36719 TGTGGCCTTCTTATCGAGCCCGTACGCTATCGCGGCTGCCGTCGGCTCGTTTATTATCCT 36660 Query 282385 CAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTT 282444 | || ||| |||||||| || || ||||| || || || || || || || ||||| Sbjct 36659 GAGAATATTCAGACCAGCGATAACGCCGGCATCCTTCGTCGCCTGCCTCTGAGAGTCGTT 36600 Query 282445 AAAATATGCAGGAACAGTAATAACGGCATCTGTTAC-TTCTTTTCCAATATAAGCGCTTG 282503 ||||| || || |||||||||||||| || || || |||| |||| ||| || | Sbjct 36599 GAAATAAGCTGGCACAGTAATAACGGCGTCCGTCACGGTCTTGCCCAA-ATACGCCTCCG 36541 Query 282504 CTGTTTGTTTCATTTTACTTAAAATCATTGATGA 282537 |||| | ||||| || ||| | ||| || || Sbjct 36540 CTGTCTCCTTCATCTTCGTTAGGACCATGGAGGA 36507 >seq1817 Length=26970 Score = 131 bits (144), Expect = 1e-24 Identities = 161/217 (74%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 282266 AAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 282325 |||| | ||||||| ||||||||||| | ||||| | | | || |||||| Sbjct 5808 AAAATTGAAACATCAAAAGTTCCACCACCTAAGTCAAATACTAAAATTTTGTGTTCTTTA 5749 Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 || ||||||| | |||||| |||| |||||||| |||||||||||||||||||| Sbjct 5748 TCAG---TTTTATCTAAACCATAAGCAATTGCAGCAGCTGTTGGTTCATTAATAATTCTT 5692 Query 282386 AAAACA-TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTT 282444 ||| ||||| ||||| || || ||||||||||| |||| ||||||| ||| || Sbjct 5691 TCAACTGTTAAG-CCAGCTATAACACCAGCATCTTTAGTTGCTTTTCTTTGTTGATCATT 5633 Query 282445 AAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 ||| || |||||||| || ||||| || | | ||||| Sbjct 5632 AAAGTAAGCAGGAACTGTGATAACAGCCTTTTTTACT 5596 >seq233 Length=61284 Score = 109 bits (120), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 637114 AAGAAAA---TTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGA 637170 ||||||| | ||||| |||| ||| ||| || ||||| || ||||||||| | ||| Sbjct 32033 AAGAAAAGGGTAATTGTAGATTTTTCCAGTCCCAACATTGCCAAGGAAATGCATGTGGGA 32092 Query 637171 CATTTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACAC 637230 || |||||||| ||||| ||||| || ||||| ||| |||||||| | |||||| Sbjct 32093 CACTTAAGATCTACTATAATTGGAGATAGTATTTCAAGGCTATTAGAATACTTAGGACAC 32152 Query 637231 GATGTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCT 637290 || || | | | ||||| | || || ||||| || || || ||||||||||| || Sbjct 32153 GACGTATTGAGACTCAATCACATAGGCGACTGGGGTACACAGTTTGGTATGTTAATAGCG 32212 Query 637291 TATATTAAAAATAA 637304 || || || |||| Sbjct 32213 CATCTTCAAGATAA 32226 >seq2796 Length=20616 Score = 98.7 bits (108), Expect = 7e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || |||||||| || |||||||| |||||||| |||| ||| |||| || || || Sbjct 17483 CCATATGCAAGTGCAGCTGCAGTCGGTTCATTTATTACCCGAAGCACATTCAATCCAGCT 17424 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || | | ||| ||| |||||||||| |||| ||||| |||||||||||||| ||| Sbjct 17423 ATCTGACCAGCATCCTTTGTTGCTTGTCGTTGTGAATCATTGAAATATGCTGGTACGGTA 17364 Query 86239 ATAACTGCTTTATT 86252 ||||| || || || Sbjct 17363 ATAACAGCATTCTT 17350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738823479133704