Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq30537 140 3e-28 seq30465 136 4e-27 seq30711 125 7e-24 seq2923 98.7 1e-15 seq36578 86.0 7e-12 >seq30537 Length=779 Score = 140 bits (154), Expect = 3e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 98191 TTAATAAATGGATACCAGTACTAAAATTTATCAGGTCGACAAACATAAACAACTTATCCC 98250 |||||||||||||| | |||||||| ||||||| | ||||| |||||||||||||| || Sbjct 207 TTAATAAATGGATAATAATACTAAAACTTATCAGATAGACAAGCATAAACAACTTATACC 148 Query 98251 GCTCAATGGGAGTATGGTCAACTTCTCTTGCTATTTCGAAGTCAAAAGCAAAGACAAAAA 98310 ||| ||||| | | || || || || |||| || || || ||||| ||||| || || Sbjct 147 GCTAAATGGTACTGCAGTTAATTTTTCATGCTTCTTTGAGGTTAAAAGTAAAGAAAATAA 88 Query 98311 ACCATTTAGCGTAGGAGTTGTGGAACAAACTGAAATGAAGCCTAAACAATACAAACTTGT 98370 ||| |||| || | || ||||| ||| | || |||||| | || ||| | || Sbjct 87 ACCCTTTAATATAACTATAGTTGAACAGGGTGATCTCAAACCTAAAAAGTATAAATTAGT 28 Query 98371 AGAAGATGGATACATCAACGGCCAA 98395 |||||||||||| ||||| || ||| Sbjct 27 AGAAGATGGATATATCAATGGTCAA 3 >seq30465 Length=784 Score = 136 bits (150), Expect = 4e-27 Identities = 277/407 (68%), Gaps = 6/407 (1%) Strand=Plus/Minus Query 143577 AAGAGACAAGAACAATACATGCGTTCTCTCGGTATTTCTCTTGAAGAAGTTAAGGACCAA 143636 ||||||||||||||||| ||||||||||| ||||| ||||| |||||||| || || || Sbjct 491 AAGAGACAAGAACAATATATGCGTTCTCTAGGTATCTCTCTGGAAGAAGTCAAAGATCAG 432 Query 143637 AATGACAGTTTGTTGGGAGAGACCAAAGATTTGAAGAAGCAAAATAATACGATCCAACGC 143696 || || ||||||| | || | | ||||| | | ||||| | |||| Sbjct 431 AACGAAGAGTTGTTGGACAAAACTATAAATTTGGAATGTGACAATAAAGAAGTTAAACGT 372 Query 143697 AAATTGGGGATCGCCGTCGAGGATAGGGCTCCTCTTCCCGAAGACaaaaaaaaGCGAGAA 143756 |||||||| || || || || ||||| || || ||||| | || ||||| || | ||| Sbjct 371 AAATTGGGTATTGCAGTAGAAGATAGAGCACCACTTCCAGTCGATAAAAAGAAACAAGAG 312 Query 143757 CGGTTTTTGCTCCTCAAACTAAACGACCCCGAATACCTTCCTTACTATACCATCAGAGCT 143816 | ||| | | | || |||||| || || | |||||| ||||| || || |||| Sbjct 311 AGATTTGTTTTAATGAAGAGAAACGATCCTGATTTCCTTCCATACTACACTATTCGAGCA 252 Query 143817 CAATATGCGTACACTCTGACCAAACTTAAGAACTATAGA--ACCTGGTATCCGAATTTGG 143874 ||| |||| || ||| | || ||||| | | ||| || | | ||| ||||| | Sbjct 251 CAAAATGCTTATACTACCAGAAAGCTTAAAATTGAGAGATTACAT--TTTCCAAATTTAG 194 Query 143875 AGGTCCTCTTGGACTTT-AAGTGCAATCCGAACTCTAAGACTCTCTATGTTCGCATCAAG 143933 | | | || ||| ||| ||| || |||||||| || | || ||||| || || Sbjct 193 AAATTTTACAAGATTTTAAAGCTCAA-CCAAACTCTAAAACGTTATACGTTCGAATAAAA 135 Query 143934 GAAAGTTTGAAGGCGAAGGGTGTTGTATTTGACGGGAACAACATAGA 143980 || |||| || || || ||||| || || || || |||||||| Sbjct 134 GATGAATTGAGGGAAAAAGGAGTTGTCTTCGATGGAAATAACATAGA 88 Score = 116 bits (128), Expect = 4e-21 Identities = 88/104 (85%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 84074 AACAAAGTAGTTGATTATGATCCTATTGCATTTATCGTAAAATTCTATGGAGACCCAAGA 84133 ||||||||||||||||||||| ||||| || ||||| || || ||||| || ||||| || Sbjct 675 AACAAAGTAGTTGATTATGATACTATTACACTTATCATAGAACTCTATCGATACCCATGA 734 Query 84134 GGCTATATCCAAGATAAGTTCTTTAGGTACGTAGGTACCAGTAA 84177 |||||||| || || ||||||||||| || || |||||||||| Sbjct 735 AGCTATATCTAAAATGAGTTCTTTAGGGACATAAGTACCAGTAA 778 >seq30711 Length=770 Score = 125 bits (138), Expect = 7e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 162100 CAAACAAAGCCACCGCTTTTGATCGACCTGTTTCGGAATCAATCTTGCCTCTTTTTGGAC 162159 || ||||| ||| | ||||| || | ||||| || |||| | | ||| ||||| || Sbjct 334 CATACAAATCCATCTTTTTTGTTCCAATTGTTTAGGGATCAGTTTCATCTCCTTTTGTAC 275 Query 162160 ACACGGATACTCTATGGCTAAAGGATGATCGTATCCAATTTCGGTATAAGGGATATTGTT 162219 ||| ||||||||||| || |||||||| | || |||||||| ||| | || || || Sbjct 274 ACATGGATACTCTATTGCCAAAGGATGTTTATAATCAATTTCGACATATGATATTTTATT 215 Query 162220 ACGTATTAGCACCCTAGAAAATTTTTCTTGTTTGTCTGATAGATCTTTTCCCTGAAATCC 162279 ||| ||| | | |||||||||||||||||| || | | || ||| || |||||||| Sbjct 214 TCGTTTTAAAATACGAGAAAATTTTTCTTGTTTATCGGTGAAATTTTTACCTTGAAATCC 155 Query 162280 CATCCACTCTAACAAACTTTGAGTCACAATTATAGGT 162316 |||||| | | ||| | ||||| | ||| || ||| Sbjct 154 CATCCATTTAAGTAAATTCTGAGTAATAATAATCGGT 118 Score = 125 bits (138), Expect = 7e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 154217 CAAACAAAGCCACCGCTTTTGATCGACCTGTTTCGGAATCAATCTTGCCTCTTTTTGGAC 154276 || ||||| ||| | ||||| || | ||||| || |||| | | ||| ||||| || Sbjct 334 CATACAAATCCATCTTTTTTGTTCCAATTGTTTAGGGATCAGTTTCATCTCCTTTTGTAC 275 Query 154277 ACACGGATACTCTATGGCTAAAGGATGATCGTATCCAATTTCGGTATAAGGGATATTGTT 154336 ||| ||||||||||| || |||||||| | || |||||||| ||| | || || || Sbjct 274 ACATGGATACTCTATTGCCAAAGGATGTTTATAATCAATTTCGACATATGATATTTTATT 215 Query 154337 ACGTATTAGCACCCTAGAAAATTTTTCTTGTTTGTCTGATAGATCTTTTCCCTGAAATCC 154396 ||| ||| | | |||||||||||||||||| || | | || ||| || |||||||| Sbjct 214 TCGTTTTAAAATACGAGAAAATTTTTCTTGTTTATCGGTGAAATTTTTACCTTGAAATCC 155 Query 154397 CATCCACTCTAACAAATTTTGAGTCGCAATTATAGGT 154433 |||||| | | ||||| ||||| ||| || ||| Sbjct 154 CATCCATTTAAGTAAATTCTGAGTAATAATAATCGGT 118 Score = 125 bits (138), Expect = 7e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29568 CAAACAAAGCCACCGCTTTTGATCGACCTGTTTCGGAATCAATCTTGCCTCTTTTTGGAC 29627 || ||||| ||| | ||||| || | ||||| || |||| | | ||| ||||| || Sbjct 334 CATACAAATCCATCTTTTTTGTTCCAATTGTTTAGGGATCAGTTTCATCTCCTTTTGTAC 275 Query 29628 ACACGGATACTCTATGGCTAAAGGATGATCGTATCCAATTTCGGTATAAGGGATATTGTT 29687 ||| ||||||||||| || |||||||| | || |||||||| ||| | || || || Sbjct 274 ACATGGATACTCTATTGCCAAAGGATGTTTATAATCAATTTCGACATATGATATTTTATT 215 Query 29688 ACGTATTAGCACCCTAGAAAATTTTTCTTGTTTGTCTGATAGATCTTTTCCCTGAAATCC 29747 ||| ||| | | |||||||||||||||||| || | | || ||| || |||||||| Sbjct 214 TCGTTTTAAAATACGAGAAAATTTTTCTTGTTTATCGGTGAAATTTTTACCTTGAAATCC 155 Query 29748 CATCCACTCTAACAAATTTTGAGTCGCAATTATAGGT 29784 |||||| | | ||||| ||||| ||| || ||| Sbjct 154 CATCCATTTAAGTAAATTCTGAGTAATAATAATCGGT 118 >seq2923 Length=20019 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/199 (71%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 146376 TAAAGGTGGCGCAATTAAGTGGGTGTGTGGCAGAGCAGACCGATTACAAGCACGGGGAGC 146435 ||||||||||||||||| || | || || ||||| | | |||| | ||||| ||| Sbjct 7945 TAAAGGTGGCGCAATTAGCGGGCTCGGTCGCCGAGCACTCGGCTTACCATCACGGCGAGA 7886 Query 146436 AAAACTTGTGCGAGACCATCATTAAGTTCGCGCAGGATTTTGTGGGCAGCAATAATATCC 146495 | || | ||| || ||||| | || || |||| || || ||||| ||||| Sbjct 7885 CGTCCCTGATGGCGACTATAATTAATCTTGCTCAAAATTTCGTCGGTAGCAACAATATTA 7826 Query 146496 CCCTTCTCTACCAGATGGG-CAATTCGGAACAAGGTTGGAAGGAGGGAAGGACGCTGCAA 146554 ||||| | | || || |||||||| |||||| | | ||||| |||||||| || | Sbjct 7825 ATCTTCTACAGCCTATTGGTCAATTCGGTACAAGGCTCGCCGGAGGAAAGGACGCCGCGA 7766 Query 146555 GTCCCAGATATATTTTCAC 146573 |||| |||||||||||||| Sbjct 7765 GTCCGAGATATATTTTCAC 7747 >seq36578 Length=509 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 84299 CCAATGAAAATAATTTTTTCCTCCTTGATTACATAATTTAGTTGCGTTAAAATACCCAGT 84358 ||||| | | |||| || ||||||| | | |||||||||| ||||| ||| | || || Sbjct 322 CCAATCACTAAAATTCTTCCCTCCTTCAGTGCATAATTTAGACGCGTTGAAAAATCCTGT 381 Query 84359 AACCTTATCTATGACCAATTTAAACTCTCCAAAGAGACCATAATAAAAGGTGTCTTTAAT 84418 ||||| | || | ||||||| ||||| | ||||||||||| | |||||| || Sbjct 382 GTTTTTATCGACGATAAGTTTAAACGGACCAAATATGCCATAATAAAACGAGTCTTTGAT 441 Query 84419 GTGTTCAAAGCATATAT 84435 |||||| || || |||| Sbjct 442 GTGTTCGAAACAGATAT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521305662946720