Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_023873.1 Length=8194 Score E Sequences producing significant alignments: (Bits) Value seq8046 120 2e-23 >seq8046 Length=7925 Score = 120 bits (132), Expect = 2e-23 Identities = 291/441 (66%), Gaps = 0/441 (0%) Strand=Plus/Plus Query 1971 GATGGAGACTGGAAAGAAGTAGTTAAGTTTTTAAGGTTTCAGGGAATTGAATTTATATCT 2030 || ||||| ||||| |||| |||||||||||| |||||| | || || | || Sbjct 4045 GAAGGAGATTGGAAGCCTATAGTAAAGTTTTTAAGGCATCAGGGGGTAGAGTTCGTGTCA 4104 Query 2031 TTTATTGCTAGTTTCAAACAGTTTTTGAGAGGAGTGCCTaaaaaaaaCTGCTTAGTCTTC 2090 || ||||| || || ||||| | ||| ||||| || || || ||| |||| || Sbjct 4105 TTCCTTGCTGCCTTTAAGTCATTTTTAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTT 4164 Query 2091 TGGGGTCCACCAAACACAGGAAAGTCAATGTTTTGCACGAGCCTATTAAATTTTTTGAAA 2150 | || || || | ||||| || ||| || |||| ||| || || | || | Sbjct 4165 TATGGACCTGCAGATACAGGCAAATCATATTTCTGCATGAGTCTTTTGCAGTTCCTAGGT 4224 Query 2151 GGCAAAGTAATTTCATATGTTAACAGCAAAAGCCAATTTTGGCTGCAGCCTTTGTCAGAA 2210 ||| ||||| ||||||| || || ||||| |||||||||||||| || | || Sbjct 4225 GGCGCTGTAATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCTGAC 4284 Query 2211 GCTAAAATAGGCCTACTAGATGATGCTACCAAACCTTGCTGGGACTACTTTGACACCTAC 2270 ||| ||||| ||||| || ||||| || | |||||| || |||| || || Sbjct 4285 AGTAAGATAGGACTACTGGACGATGCGACGGCCCAGTGCTGGACGTATATTGATACATAT 4344 Query 2271 ATGCGCAATGCACTGGATGGCAATGCTGTAAGTATAGATTGCAAACACAAAGCCCCACTG 2330 | | || ||| ||||| || | | |||||||| | ||||| || ||| ||| Sbjct 4345 CTTAGGAACCTACTAGATGGAAACCCCTTCAGTATAGACAGGAAACATAAGACCCTGCTG 4404 Query 2331 CAATTAAAATGCCCACCTCTACTTGTAACCACAAATGTGGATGTGCATGCTGATGAGAGG 2390 || ||||||| || || || | |||| || || | || | | || || || Sbjct 4405 CAGATAAAATGTCCTCCATTAATGATAACAACCAACATAAATCCTCTAGAGGAGGACAGA 4464 Query 2391 TGGAAGTATCTGCGCAGTAGA 2411 ||||||||| ||||||| ||| Sbjct 4465 TGGAAGTATTTGCGCAGCAGA 4485 Score = 89.7 bits (98), Expect = 3e-14 Identities = 119/161 (74%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 6880 AACACCACTATTGAGGATGGGGACATGGTAGATATAGGTTTTGGGGCCATGAACTTT-CG 6938 ||||||||||||||||||||||| ||||| || | || || |||||| || | ||| | Sbjct 403 AACACCACTATTGAGGATGGGGATATGGTTGAAACCGGGTTCGGGGCCCTGGATTTTGCC 462 Query 6939 GCTGCTGCAG--CAGCATAGGTCGGGGGTGCCTCTAGATATTGCAGGTGGCATGTGTAAA 6996 ||| || ||| || || | || | || || || |||||| | ||| |||||| Sbjct 463 GCT-CTACAGTCCAACAAA--TCTGATGTCCCCCTGGATATTTGTACTAACATATGTAAA 519 Query 6997 TATCCTGACTATATTAAAATGGCAAATGACCCATATGGGGA 7037 ||||| |||||| | |||||||| |||||| ||||| || Sbjct 520 TATCCGGACTATCTGAAAATGGCTGCTGACCCCTATGGCGA 560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26094791106848