Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_024300.1 Length=8132 Score E Sequences producing significant alignments: (Bits) Value seq8046 86.0 3e-13 >seq8046 Length=7925 Score = 86.0 bits (94), Expect = 3e-13 Identities = 168/244 (69%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 1955 AGCCATTTCTGGCTGCAGCCGCTTGCAGATGCTAAGCTGGCACTTATAGATGATGCTACG 2014 ||||| || ||||||||||| | || || |||| | | ||| | || ||||| ||| Sbjct 4255 AGCCACTTTTGGCTGCAGCCCTTAGCTGACAGTAAGATAGGACTACTGGACGATGCGACG 4314 Query 2015 GAGCCCTGCTGGACCTATATTGATACCTACCTTCGTACAGCACTCGACGGCAGCCCTATT 2074 | | |||||||| ||||||||||| || ||| | | ||| || || | ||| | Sbjct 4315 GCCCAGTGCTGGACGTATATTGATACATATCTTAGGAACCTACTAGATGGAAACCCCTTC 4374 Query 2075 TCTTTAGATATGAAGCACAGGGCCCCGATGCAGATAAAATGccccccccTACTAATCACA 2134 | |||| | ||| || | | ||| | ||||||||||||| || || || | || ||| Sbjct 4375 AGTATAGACAGGAAACATAAGACCCTGCTGCAGATAAAATGTCCTCCATTAATGATAACA 4434 Query 2135 TCTAACACTAA-CATCTCAGA-GAGCCCAGAAAAGTACAAGTATTTGCTTAACAGGATAA 2192 | |||| || | ||| ||| ||| |||| | |||||||||| | ||| ||| Sbjct 4435 ACCAACATAAATCCTCT-AGAGGAGGACAGA----TGGAAGTATTTGCGCAGCAGAGTAA 4489 Query 2193 CACT 2196 |||| Sbjct 4490 CACT 4493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25896473253376